DNA Binding Motif

						

			
Accessions: UN0453.1 (JASPAR 2024)

			
Names: HNF4
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 22
Consensus: gracttTGGACTTTGrmCyytk
Weblogo: 
PSSM: P0      A      C      G      T
01    152    120    585    143      g
02    305    116    460    119      r
03    503    242    138    118      a
04    196    532    140    133      c
05    194    138    147    521      t
06    167     81    192    561      t
07     23    117     18    842      T
08     15      8    959     19      G
09    214     19    740     26      G
10    811    167     12     11      A
11      8    976      7      9      C
12      9     58     10    923      T
13     24     58     25    893      T
14     32     39     29    899      T
15     59     57    815     69      G
16    358    126    384    131      r
17    454    374     81     90      m
18     56    796     66     82      C
19     53    454     62    432      y
20     99    407    132    363      y
21    195    189    183    433      t
22    240    229    280    251      k
Type: Heterodimer
Binding TFs: Q4H3D5 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
Q4H3D5
			
	
			


			

				

				
				
				
				

			

			

		

	
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