DNA Binding Motif

						

			
Accessions: NagC (RegulonDB 7.5)

			
Names: NagC, NagC DNA-binding transcriptional dual regulator
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 22
Consensus: wswTAwTTykhrtmryrAAwTA
Weblogo: 
PSSM: P0      A      C      G      T
01      8      0      3      6      w
02      1      7      6      3      s
03      8      0      0      9      w
04      2      0      0     15      T
05     14      0      0      3      A
06      6      0      0     11      w
07      1      0      0     16      T
08      0      0      0     17      T
09      3      8      0      6      y
10      0      1     10      6      k
11      5      7      0      5      h
12      8      1      6      2      r
13      4      2      1     10      t
14      5      7      4      1      m
15      6      0      8      3      r
16      0      7      1      9      y
17      6      0     11      0      r
18     16      1      0      0      A
19     17      0      0      0      A
20      8      1      2      6      w
21      3      0      2     12      T
22     14      0      3      0      A
Binding TFs: ECK120005105 (ROK family, MarR family)
Binding Sites: ECK120011910
ECK120011913
ECK120012042
ECK120012044
ECK120012577
ECK120012579
ECK120013206
ECK120013590
ECK120013593
ECK120016170
ECK120048747
ECK125134894
ECK125134902
ECK125134904
ECK125134906
ECK125134912
			
Publications: Plumbridge J., Kolb A. CAP and Nag repressor binding to the regulatory regions of the nagE-B and manX genes of Escherichia coli. J Mol Biol. 217(4):661-79 (1991). [Pubmed]


Plumbridge J. Control of the expression of the manXYZ operon in Escherichia coli: Mlc is a negative regulator of the mannose PTS. Mol Microbiol. 27(2):369-80 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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