DNA Binding Motif

						

			
Accessions: UBP1_2 (HT-SELEX2 May2017)

			
Names: UBP1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 18
Consensus: arCCrGytyraaCyrGyt
Weblogo: 
PSSM: P0      A      C      G      T
01   4043   1306   1998   1892      a
02   4678    183   2382   1997      r
03      0   8439   1733      0      C
04    785   8047      0   2848      C
05   3505      0   7920    654      r
06      0   1445   8693      0      G
07   1719   2346      4   5171      y
08   1383   1868   1395   4594      t
09   1346   3709   1318   2868      y
10   2746   1441   3785   1268      r
11   4216   1259   2162   1603      a
12   5378      0   2244   1740      a
13      0   8743   1901      0      C
14    666   7882     26   3373      y
15   3406      0   8020    682      r
16      0   1844   8286      0      G
17   2275   2712      0   4295      y
18   1645   2022   1550   4023      t
Binding TFs: UBP1 (CP2 transcription factor)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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