Transcription Factor
| Accessions: | UBP1 (HT-SELEX2 May2017) |
| Names: | ENSG00000153560, UBP1 |
| Organisms: | Homo sapiens |
| Libraries: | HT-SELEX2 May2017 1 1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed] |
| Notes: | TF family: CP2 experiment: HT-SELEX Hamming distance: 2 cycle: 4, TF family: CP2 experiment: Methyl-HT-SELEX Hamming distance: 2 cycle: 4 |
| Length: | 265 |
| Pfam Domains: | 39-243 CP2 transcription factor |
| Sequence: (in bold interface residues) | 1 VHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETEHPPFQYVMCAATSPA 60 61 VKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVVFHDRRLQYTEHQQLE 120 121 GWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTP 180 181 RKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGADRKQKTDREKMEKRT 240 241 AHEKEKYQPSYDTTILTEMRLEPII |
| Interface Residues: | 222, 227, 230 |
| 3D-footprint Homologues: | 5mpf_B |
| Binding Motifs: | UBP1_2 arCCrGytyraaCyrGyt UBP1_methyl_1 awCyrGttyraaCyrGwt |
| Related annotations: | PaperBLAST |
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