DNA Binding Motif

						

			
Accessions: 1hf0_AB (3D-footprint 20231221)

			
Names: OCTAMER-BINDING TRANSCRIPTION FACTOR 1
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the DNA-binding domain of Oct-1 bound to DNA as a dimer
Length: 17
Consensus: CGTTTGAAAGGCAAATG
Weblogo: 
PSSM: P0      A      C      G      T
01      0     84      0     12      C
02     14      7     72      3      G
03      0      0      0     96      T
04      5      3      7     81      T
05      3      0      0     93      T
06      0      0     96      0      G
07     81      5      7      3      A
08     96      0      0      0      A
09     96      0      0      0      A
10      3      3     81      9      G
11     12      7     70      7      G
12      0     96      0      0      C
13     96      0      0      0      A
14     96      0      0      0      A
15     96      0      0      0      A
16      1      3      0     92      T
17      7      1     88      0      G
Binding TFs: 1hf0_A / 1hf0_B (Homeobox domain, Pou domain - N-terminal to homeobox domain)
Binding Sites: 1hf0_M
1hf0_N
			
Publications: Reményi A, Tomilin A, Pohl E, Lins K, Philippsen A, Reinbold R, Schöler H.R, Wilmanns M. Differential dimer activities of the transcription factor Oct-1 by DNA-induced interface swapping. Molecular cell 8:569-80 (2001). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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