DNA Binding Motif

						

			
Accessions: EEAD0046 (EEADannot 2026-03-04)

			
Names: IDE
Organisms: Oryza sativa
Libraries: EEADannot 2026-03-04 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 9
Consensus: hKCATGCwT
Weblogo: 
PSSM: P0      A      C      G      T
01      5      3      0      4      h
02      0      0      9      3      K
03      0     12      0      0      C
04     12      0      0      0      A
05      0      0      0     12      T
06      0      0     12      0      G
07      0     10      2      0      C
08      4      0      1      7      w
09      0      0      2     10      T
Binding TFs: IDEF1 (B3 DNA binding domain)
			
Publications: Kobayashi T., Ogo Y., Itai R. N., Nakanishi H., Takahashi M., Mori S., Nishizawa N. K. The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants.. Proc. Natl. Acad. Sci. USA 104:19150-19155 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.