DNA Binding Motif

						

			
Accessions: 2ld5_A (3D-footprint 20231221)

			
Names: Homeobox protein Hox-A13
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Solution NMR-derived complex structure of Hoxa13 DNA binding domain bound to DNA
Length: 9
Consensus: AAATAAaAT
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02     81      0      7      8      A
03     96      0      0      0      A
04      0      0      0     96      T
05     96      0      0      0      A
06     96      0      0      0      A
07     60     22     14      0      a
08     66      7      7     16      A
09      9      7      7     73      T
Binding TFs: 2ld5_A (Homeobox domain)
Binding Sites: 2ld5_B
2ld5_C
			
Publications: Zhang Y, Larsen C.A, Stadler H.S, Ames J.B. Structural basis for sequence specific DNA binding and protein dimerization of HOXA13. PloS one 6:e23069 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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