DNA Binding Motif
| Accessions: | MA1326.1 (JASPAR 2024), M0857 (AthalianaCistrome v4_May2016) |
| Names: | ATHB33, ZHD5, ATHB33.DAP, T00023; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 11 |
| Consensus: | ayrTrATTAry |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 206 122 140 132 a 02 116 217 105 162 y 03 165 19 371 45 r 04 0 22 2 576 T 05 316 90 194 0 r 06 591 3 6 0 A 07 0 0 0 600 T 08 0 0 0 600 T 09 599 0 0 1 A 10 335 19 237 9 r 11 51 170 138 241 y |
| Type: | Heterodimer |
| Binding TFs: | Q9FRL5 / T00023 (ZF-HD protein dimerisation region) Q9FRL5 |
| Binding Sites: | MA1326.1.1 MA1326.1.10 MA1326.1.11 MA1326.1.12 MA1326.1.13 MA1326.1.14 / MA1326.1.8 MA1326.1.15 MA1326.1.16 MA1326.1.17 MA1326.1.18 MA1326.1.19 MA1326.1.2 MA1326.1.20 MA1326.1.3 MA1326.1.4 MA1326.1.5 MA1326.1.6 MA1326.1.7 MA1326.1.9 |
| Publications: | Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed] O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.