Transcription Factor
| Accessions: | Q9FRL5 (JASPAR 2024), T00023 (AthalianaCistrome v4_May2016) |
| Names: | AtHB-33, AtZHD5, Homeobox protein 33, ZHD5_ARATH, Zinc-finger homeodomain protein 5, AT1G75240, ATHB33, T00023; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:ZF-HD |
| Length: | 309 |
| Pfam Domains: | 72-127 ZF-HD protein dimerisation region |
| Sequence: (in bold interface residues) | 1 MDMRSHEMIERRREDNGNNNGGVVISNIISTNIDDNCNGNNNNTRVSCNSQTLDHHQSKS 60 61 PSSFSISAAAKPTVRYRECLKNHAASVGGSVHDGCGEFMPSGEEGTIEALRCAACDCHRN 120 121 FHRKEMDGVGSSDLISHHRHHHYHHNQYGGGGGRRPPPPNMMLNPLMLPPPPNYQPIHHH 180 181 KYGMSPPGGGGMVTPMSVAYGGGGGGAESSSEDLNLYGQSSGEGAGAAAGQMAFSMSSSK 240 241 KRFRTKFTTDQKERMMDFAEKLGWRMNKQDEEELKRFCGEIGVKRQVFKVWMHNNKNNAK 300 301 KPPTPTTTL |
| Interface Residues: | 6, 7, 10, 13, 14, 241, 244, 290, 293, 294, 297, 298 |
| 3D-footprint Homologues: | 7ssa_L, 3d1n_M, 2hdd_A, 1du0_A |
| Binding Motifs: | M0857 / MA1326.1 ayrTrATTAry M0859 wwwwahrTrATTAry MA1326.2 rTrATTAr |
| Binding Sites: | MA1326.2.16 MA1326.1.1 MA1326.1.10 MA1326.1.11 MA1326.1.12 MA1326.1.13 MA1326.1.14 / MA1326.1.8 MA1326.1.15 MA1326.1.16 MA1326.1.17 MA1326.1.18 MA1326.1.19 MA1326.1.2 MA1326.1.20 MA1326.1.3 MA1326.1.4 MA1326.1.5 MA1326.1.6 MA1326.1.7 MA1326.1.9 MA1326.2.1 MA1326.2.10 MA1326.2.11 MA1326.2.12 MA1326.2.13 MA1326.2.14 / MA1326.2.8 MA1326.2.15 MA1326.2.17 MA1326.2.18 MA1326.2.19 MA1326.2.2 MA1326.2.20 MA1326.2.3 MA1326.2.4 MA1326.2.5 MA1326.2.6 MA1326.2.7 MA1326.2.9 |
| Publications: | Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed] |
| Related annotations: | PaperBLAST |
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