DNA Binding Motif

						

			
Accessions: Sox17_DBD_2 (HumanTF 1.0)

			
Names: Sox17
Organisms: Mus musculus
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3; Possible binding to single stranded DNA
Length: 15
Consensus: ATGAATwwCATTCAT
Weblogo: 
PSSM: P0      A      C      G      T
01    441     12     16     35      A
02      4      3      0    441      T
03     35      0    441      0      G
04    441      1      0      1      A
05    441     13     10      0      A
06      1      0      0    441      T
07    200     12     18    241      w
08    131     77     98    135      w
09     12    441      8     34      C
10    441      0      0      0      A
11      1      1    102    441      T
12      3      0      0    441      T
13      0    441      0     10      C
14    441      0      0      3      A
15     32     12     23    441      T
Binding TFs: Sox17_DBD (HMG (high mobility group) box, Domain of unknown function (DUF1898))
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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