DNA Binding Motif

						

			
Accessions: MA1736.1 (JASPAR 2024)

			
Names: AT5G04390
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 11
Consensus: ywmywwCACTh
Weblogo: 
PSSM: P0      A      C      G      T
01    175    404 83.472    337      y
02    401    214 58.431    327      w
03    382    294    119    205      m
04    145    441  120.2    294      y
05    270    132 88.481    509      w
06    270    170      0    559      w
07      0    985      0 15.025      C
08   1000      0      0      0      A
09      0    963 36.728      0      C
10      0      0      0   1000      T
11    289    277    180    254      h
Type: Heterodimer
Binding TFs: Q84K31 (C2H2-type zinc finger, C2H2-type zinc finger)
Q84K31
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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