Transcription Factor
| Accessions: | T037047_1.02 (CISBP 1.02), T22974 (AthalianaCistrome v4_May2016), Q84K31 (JASPAR 2024) |
| Names: | AT5G04390, T037047_1.02;, T22974;, C2H2-type zinc finger family protein, Putative zinc finger transcription factor, Q84K31_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, AthalianaCistrome v4_May2016 2, JASPAR 2024 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 3 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF, ecotype:Col-0, experiment type: DAP-seq, family:C2H2 |
| Length: | 362 |
| Pfam Domains: | 152-177 C2H2-type zinc finger 228-253 C2H2-type zinc finger 229-251 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MEAFEEATKEQSLILKGKRTKRQRPQSPIPFSISPPIVSTPENNMEEEYTDLDSKDNALG 60 61 NDEGNHKKDGVITSSSSSASWSSQNNHTLKAAEDEEDQDIANCLILLAQGHSLPHNNHHL 120 121 PNSNNNNTYRFTSRRFLETSSSNSGGKAGYYVYQCKTCDRTFPSFQALGGHRASHKKPKA 180 181 ASFYSNLDLKKNTYANDAVSLVHTTTTVFKNNNSRSLVVYGKASKNKVHECGICGAEFTS 240 241 GQALGGHMRRHRGAVVVPAVIAPTVTVATAAANTELSLSSMSFDQISDGHQDHLAMPAKK 300 301 KARTVVSLDLDLNLPAPEDENRVNGFSFASKQNHEQEHQQKKQREEPKSLVLSAPTLVDC 360 361 HY |
| Interface Residues: | 153, 164, 165, 166, 167, 170, 176, 184, 185, 187, 188, 191, 211, 213, 215, 216, 219, 223, 239, 240, 241, 242, 243, 244, 246, 276, 277 |
| 3D-footprint Homologues: | 2kmk_A, 8ssu_A, 5kkq_D, 5v3j_F, 7w1m_H, 8ssq_A, 5yel_A, 3uk3_C, 6ml4_A, 7y3l_A, 7n5w_A, 8h9h_G, 7txc_E |
| Binding Motifs: | M0375_1.02 rasTrwa M0308 dAGTGwwrkwr MA1736.1 ywmywwCACTh MA1736.2 wCACT |
| Publications: | O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Related annotations: | PaperBLAST |
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