Transcription Factor
| Accessions: | T151039_1.02 (CISBP 1.02), Q9C758 (JASPAR 2024), T03606 (AthalianaCistrome v4_May2016) |
| Names: | T151039_1.02;, TCP24, TCP24_ARATH, AT1G30210, T03606; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:TCP, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq |
| Length: | 324 |
| Pfam Domains: | 48-166 TCP family transcription factor |
| Sequence: (in bold interface residues) | 1 MEVDEDIELQKHQEQQSRKLQRFSEDNTGLMRNWNNPSSRIIRVSRASGGKDRHSKVLTS 60 61 KGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPLLNTNFDHLDQ 120 121 NQNQTKSACSSGTSESSLLSLSRTEIRGKARERARERTAKDRDKDLQNAHSSFTQLLTGG 180 181 FDQQPSNRNWTGGSDCFNPVQLQIPNSSSQEPMNHPFSFVPDYNFGISSSSSAINGGYSS 240 241 RGTLQSNSQSLFLNNNNNITQRSSISSSSSSSSPMDSQSISFFMATPPPLDHHNHQLPET 300 301 FDGRLYLYYGEGNRSSDDKAKERR |
| Interface Residues: | 52, 53, 54, 67, 69 |
| 3D-footprint Homologues: | 7vp3_D, 7vp2_B |
| Binding Motifs: | M1644_1.02 tgGksccysy M0746 / MA1286.1 rtkGGGACCACh M0768 GTGGGGACCAC MA1286.2 GGGACCAC |
| Binding Sites: | MA1286.2.16 MA1286.2.3 MA1286.2.18 MA1286.1.1 MA1286.1.10 MA1286.1.11 MA1286.1.12 MA1286.1.13 MA1286.1.14 MA1286.1.15 MA1286.1.16 MA1286.1.17 MA1286.1.18 MA1286.1.19 MA1286.1.2 MA1286.1.20 MA1286.1.3 MA1286.1.4 MA1286.1.5 MA1286.1.6 MA1286.1.7 MA1286.1.8 MA1286.1.9 MA1286.2.1 MA1286.2.10 MA1286.2.11 MA1286.2.12 MA1286.2.13 MA1286.2.14 MA1286.2.15 MA1286.2.17 MA1286.2.19 MA1286.2.2 MA1286.2.20 MA1286.2.4 MA1286.2.5 MA1286.2.6 MA1286.2.7 MA1286.2.8 MA1286.2.9 |
| Publications: | Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed] |
| Related annotations: | PaperBLAST |
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