Transcription Factor
| Accessions: | D9HNT7 (JASPAR 2024) |
| Names: | D9HNT7_MAIZE |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | D9HNT7 |
| Length: | 799 |
| Pfam Domains: | 122-223 B3 DNA binding domain 248-329 Auxin response factor 675-775 AUX/IAA family |
| Sequence: (in bold interface residues) | 1 MAPPSQPPSNSGDPLYPELWRACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVAGNQM 60 61 RLYDLPPKLLCRVLNVELKAETDTDEVYAQIMLMPEPEQTDVPAEKPSSAPAASPRPAVR 120 121 SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTQSPPTQELVAKDLHGMEWRFRHIFRG 180 181 QPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQLSNVPSSVISSQSM 240 241 HLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEE 300 301 APEQRFTGTIVGCENLDPLWPDSSWRYLKVRWDEPSTIPRPDRVSPWKIEPASSPPVNPL 360 361 VHSSRAKRPRQNVPPPSLESSVLTKEGATKVEIDSAQTQHQNSVLQGQEQMTLRNNLTES 420 421 ADSDSTVQKPMMWSPSLNGKAHTHFQQRPAMDNWMPLGRRENDFKDTRSAFKDARTASQS 480 481 FGDTQGFFVQAYDDNHHRLSFKNQGSTHRFADPYFYMPQQSSVTVESSTRTQTANNDLCF 540 541 WGDQNAMYGNPSDQQQGFNFGQNPSSWLNQPFPQVEQPRVVRPHATVAPFDLEKTREGSG 600 601 FKIFGFQVDTTSPSPVQLSSPLPAIQEHVLQTRPSAPVNELQPVQIECLPEGSVSTAGTA 660 661 TENIQQAPQSSKDIQSKSQGASTRSCTKVHKQGVALGRSVDLSKFTDYGELQAELDKMFD 720 721 FEGELVSGSQNWQIVYTDDEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSKSAAPR 780 781 KEESPAAGGGGGCAAATNE |
| Interface Residues: | 129, 134, 135, 136, 138, 179, 181, 182, 184 |
| 3D-footprint Homologues: | 6ycq_A, 7et6_A, 8oj2_A |
| Binding Motifs: | MA1685.1 mhArhGGGRGACAmb MA1685.2 ArhGGGRGACA |
| Binding Sites: | MA1685.1.1 MA1685.1.10 MA1685.1.11 / MA1685.1.12 MA1685.1.12 / MA1685.1.13 MA1685.1.13 / MA1685.1.14 MA1685.1.14 / MA1685.1.15 MA1685.1.15 / MA1685.1.16 MA1685.1.16 / MA1685.1.17 MA1685.1.17 / MA1685.1.18 MA1685.1.18 / MA1685.1.19 MA1685.1.19 / MA1685.1.20 MA1685.1.2 MA1685.1.20 MA1685.1.3 MA1685.1.4 MA1685.1.5 / MA1685.1.6 MA1685.1.5 / MA1685.1.7 MA1685.1.6 / MA1685.1.8 MA1685.1.7 / MA1685.1.9 MA1685.1.10 MA1685.1.11 MA1685.1.8 MA1685.1.9 MA1685.2.1 MA1685.2.10 MA1685.2.11 MA1685.2.12 MA1685.2.13 MA1685.2.14 MA1685.2.15 MA1685.2.16 MA1685.2.17 MA1685.2.18 MA1685.2.19 / MA1685.2.20 MA1685.2.2 MA1685.2.3 MA1685.2.4 MA1685.2.5 MA1685.2.6 MA1685.2.7 MA1685.2.8 MA1685.2.9 |
| Publications: | Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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