Transcription Factor

						

			
Accessions: SP1_MOUSE (HOCOMOCO 10)

			
Names: SP1_MOUSE
Organisms: Mus musculus
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Uniprot: O89090
Length: 784
Pfam Domains:   627-651 C2H2-type zinc finger
  627-651 Zinc finger, C2H2 type
  643-670 Zinc-finger double domain
  657-681 Zinc finger, C2H2 type
  659-681 C2H2-type zinc finger
  674-696 Zinc-finger double domain
  687-709 C2H2-type zinc finger
  687-709 Zinc finger, C2H2 type
Sequence: 
(in bold interface residues)		   1 MSDQDHSMDEVTAVVKIEKDVGGNNGGSGNGGGAAFSQTRSSSTGSSSSSGGGGGQESQP   60
  61 SPLALLAATCSRIESPNENSNNSQGPSQSGGTGELDLTATQLSQGANGWQIISSSSGATP  120
 121 TSKEQSGNSTNGSNGSESSKNRTVSGGQYVVAATPNLQNQQVLTGLPGVMPNIQYQVIPQ  180
 181 FQTVDGQQLQFAATGAQVQQDGSGQIQIIPGANQQIIPNRGSGGNIIAAMPNLLQQAVPL  240
 241 QGLANNVLSGQTQYVTNVPVALNGNITLLPVNSVSAATLTPSSQAGTISSSGSQESSSQP  300
 301 VTSGTAISSASLVSSQASSSSFFTNANSYSTTTTTSNMGIMNFTSSGSSGTSSQGQTPQR  360
 361 VGGLQGSDSLNIQQNQTSGGSLQGSQQKEGEQSQQTQQQQILIQPQLVQGGQALQALQAA  420
 421 PLSGQTFTTQAISQETLQNLQLQAVQNSGPIIIRTPTVGPNGQVSWQTLQLQNLQVQNPQ  480
 481 AQTITLAPMQGVSLGQTSSSNTTLTPIASAASIPAGTVTVNAAQLSSMPGLQTINLSALG  540
 541 TSGIQVHQLPGLPLAIANTPGDHGTQLGLHGSGGDGIHDETAGGEGENSSDLQPQAGRRT  600
 601 RREACTCPYCKDSEGRASGDPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGERPFMCN  660
 661 WSYCGKRFTRSDELQRHKRTHTGEKKFACPECPKRFMRSDHLSKHIKTHQNKKGGPGVAL  720
 721 SVGTLPLDSGAGSEGTATPSALITTNMVAMEAICPEGIARLANSGINVMQVTELQSINIS  780
 781 GNGF
Interface Residues: 590, 591, 594, 611, 616, 617, 618, 619, 620, 622, 632, 634, 636, 639, 640, 641, 642, 643, 645, 646, 648, 649, 652, 668, 669, 670, 671, 672, 673, 675, 676, 677, 680, 697, 698, 699, 700, 701, 702, 703, 704, 705, 708
3D-footprint Homologues: 2i13_A, 7ysf_A, 5yel_A, 1ubd_C, 7eyi_G, 7n5w_A, 8h9h_G, 6jnm_A, 8cuc_F, 1tf3_A, 7y3l_A, 6ml4_A, 5kl3_A, 5ei9_F, 8ssq_A, 1mey_C, 5und_A, 5k5i_A, 2kmk_A, 8ssu_A, 2gli_A, 8gn3_A, 1g2f_F, 6blw_A, 5kkq_D, 1tf6_A, 6u9q_A, 4x9j_A, 5v3j_F, 6e94_A, 6wmi_A, 2lt7_A, 7y3m_I, 6a57_A, 2jpa_A, 7w1m_H, 3uk3_C, 2wbs_A, 2drp_D, 1f2i_J, 1llm_D, 7txc_E, 4m9v_C, 5yj3_D
Binding Motifs: SP1_MOUSE.H10MO.A|M01351 gggrrgGGGGcGGGGcsrg
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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