Transcription Factor
Accessions: | P56721 (JASPAR 2024) |
Names: | COLL_DROME, Transcription factor collier, Transcription factor knot |
Organisms: | Drosophila melanogaster |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Uniprot: | P56721 |
Length: | 575 |
Pfam Domains: | 299-381 IPT/TIG domain |
Sequence: (in bold interface residues) | 1 MEWGRKLYPSAVSGPRSAGGLMFGLPPTAAVDMNQPRGPMTSLKEEPLGSRWAMQPVVDQ 60 61 SNLGIGRAHFEKQPPSNLRKSNFFHFVIALYDRAGQPIEIERTAFIGFIEKDSESDATKT 120 121 NNGIQYRLQLLYANGARQEQDIFVRLIDSVTKQAIIYEGQDKNPEMCRVLLTHEVMCSRC 180 181 CDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVISTQVAVDGP 240 241 LLAISDNMFVHNNSKHGRRAKRLDTTEGTGNTSLSISGHPLAPDSTYDGLYPPLPVATPC 300 301 IKAISPSEGWTTGGATVIIVGDNFFDGLQVVFGTMLVWSELITSHAIRVQTPPRHIPGVV 360 361 EVTLSYKSKQFCKGSPGRFVYVSALNEPTIDYGFQRLQKLIPRHPGDPEKLQKEIILKRA 420 421 ADLVEALYSMPRSPGGSTGFNSYAGQLAVSVQDGSGQWTEDDYQRAQSSSVSPRGGYCSS 480 481 ASTPHSSGGSYGATAASAAVAATANGYAPAPNMGTLSSSPGSVFNSTSMSAVSSTWHQAF 540 541 VQHHHAATAHPHHHYPHPHQPWHNPAVSAATAAAV |
Interface Residues: | 79, 81, 82, 179, 188, 218, 220, 252, 253, 254, 255, 387 |
3D-footprint Homologues: | 3mlp_F, 3mln_A, 2ypa_A |
Binding Motifs: | MA1841.1 bkrgTCCCcaGGGAcyhs MA1841.2 TCCCcaGGGA |
Binding Sites: | MA1841.1.1 MA1841.1.10 MA1841.1.11 MA1841.1.12 MA1841.1.13 MA1841.1.14 MA1841.1.15 MA1841.1.16 MA1841.1.17 MA1841.1.18 MA1841.1.19 MA1841.1.2 / MA1841.1.3 MA1841.1.20 MA1841.1.3 / MA1841.1.4 MA1841.1.11 / MA1841.1.4 MA1841.1.12 / MA1841.1.5 MA1841.1.14 / MA1841.1.6 MA1841.1.17 / MA1841.1.7 MA1841.1.18 / MA1841.1.8 MA1841.1.9 MA1841.1.10 MA1841.1.13 MA1841.1.15 MA1841.1.16 MA1841.1.19 MA1841.1.2 MA1841.1.20 MA1841.1.5 MA1841.1.6 MA1841.1.7 MA1841.1.8 MA1841.1.9 MA1841.2.1 / MA1841.2.14 MA1841.2.10 / MA1841.2.9 MA1841.2.11 MA1841.2.12 / MA1841.2.4 MA1841.2.13 MA1841.2.15 MA1841.2.16 / MA1841.2.6 MA1841.2.17 MA1841.2.18 MA1841.2.19 MA1841.2.2 / MA1841.2.3 MA1841.2.20 MA1841.2.5 MA1841.2.7 MA1841.2.8 |
Publications: | Nitta KR, Jolma A, Yin Y, Morgunova E, Kivioja T, Akhtar J, Hens K, Toivonen J, Deplancke B, Furlong EE, Taipale J. Conservation of transcription factor binding specificities across 600 million years of bilateria evolution. Elife : (2015). [Pubmed] |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.