Transcription Factor

						

			
Accessions: F1NCE0 (JASPAR 2024)

			
Names: F1NCE0_CHICK
Organisms: Gallus gallus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: F1NCE0
Length: 804
Pfam Domains:   577-614 Tesmin/TSO1-like CXC domain
  649-689 Tesmin/TSO1-like CXC domain
Sequence: 
(in bold interface residues)		   1 MEVVSAEVNSLLPEEIMDTGITLVEDDSIEAVIVSSPMGDSIPMETELEEIVNISSTSDA   60
  61 SVTTTATVTAEPVTAPSNHSGDVTANTTTIKTEGNSVVKPAFQSGLHKLGAQTPVTISAN  120
 121 QIILNKTTDLKIGNQSIKPDGQKLIVTTLGKTGQPIVLALPRCQLPQAQKTVSQTQGGDS  180
 181 KVQGQQIKVVIGGRSEVKPVVGVSALTQGSQLINTAAQPSVLQTQQLKTVQIAKKTRTAT  240
 241 SGPVITKLIFAKPINSKAVTGQTTQVSPVIAGRVVSQSTPGTPPKTITISESGVIGSSLS  300
 301 TTTQQTPNKIAISPLKSPNKLTVVSVASQPPNSPQKTVGVPLNVALGQQILTVQQSAPSS  360
 361 PGKAIVNHTTTQAVKSAVQAITVGGVGTSQFKTIIPLATAPNVQQIQVPGSKFHYVRLVT  420
 421 ATTANSSTQSASQNPSTNTQPLQQAKPVVVNATPVRMSVPIVPAQTVKQVVPKPLNPTSQ  480
 481 IVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSS  540
 541 YVSIASNTGFTGTSSIQSQARLPFNGIIPSESANRPRKPCNCTKSLCLKLYCDCFANGEF  600
 601 CNNCNCTNCYNNLDHENDRQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSG  660
 661 CLKNYCECYEAKIMCSSICKCVGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQ  720
 721 ISDLLTRPTPALSSGGGKLPFTFVTKEVADATCECLLAQAEQAEKMGKSKAAAERMILEE  780
 781 FGRCLMRVINSAGKSKSDPCAMNC
Interface Residues: 591, 665
3D-footprint Homologues: 5fd3_A, 4rkh_F
Binding Motifs: MA0619.1 wTTTrAATt
			
Publications: Schmit F, Cremer S, Gaubatz S. LIN54 is an essential core subunit of the DREAM/LINC complex that binds to the cdc2 promoter in a sequence-specific manner. FEBS J 276:5703-16 (2009). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.