Transcription Factor
| Accessions: | T057799_1.02 (CISBP 1.02) |
| Names: | CG12605, T057799_1.02; |
| Organisms: | Drosophila melanogaster |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:B1H, family:C2H2 ZF |
| Length: | 474 |
| Pfam Domains: | 294-318 C2H2-type zinc finger 294-316 C2H2-type zinc finger 294-316 Zinc finger, C2H2 type 351-373 Zinc finger, C2H2 type 351-373 C2H2-type zinc finger 351-373 C2H2-type zinc finger 366-389 Zinc-finger double domain 379-401 Zinc finger, C2H2 type 379-401 C2H2-type zinc finger 379-401 C2H2-type zinc finger 393-417 Zinc-finger double domain 407-428 C2H2-type zinc finger 407-430 Zinc finger, C2H2 type 407-421 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MNLKEFSVQNKDSIQPMDLSLRRPVGRAPAEDGKVIFYAPPASASGSPRQPEPVALKRER 60 61 ERDKEREREKERERDRMREQQLVAATAAASIYRGRSVEETEAAHDLLSLSQSLPPLIPPC 120 121 VVTIMKQEQEQLRSPEIQEISNSASSRSPQSTIRFIGSSSYDLMGGSSEGANNCSPLTPP 180 181 NSDHSSDVDIDMSSSSESGLQQWGKPNPQQNQQRASALKMCLNMLDGRTKASKAAAVTKQ 240 241 DRQEPMQPRPKSAQSNASSGGGPPSEPPENPAASLGHSSSGNGENYAKRKRGCYKCCECG 300 301 KQYATSSNLSRHKQTHRSLDSQSAKKCNTCGKAYVSMPALAMHLLTHKLSHSCDICGKLF 360 361 SRPWLLQGHLRSHTGEKPYACVHCGKAFADRSNLRAHMQTHSGDKNFKCHRCNKTFALKS 420 421 YLNKHLESACLRDAGAIDQGKGLEEEDDDCSKQDELEMGDELESDENSQDIVVA |
| Interface Residues: | 304, 305, 307, 308, 311, 335, 336, 337, 338, 339, 341, 342, 344, 345, 361, 362, 363, 364, 365, 367, 368, 369, 389, 390, 391, 392, 393, 394, 395, 396, 397, 400, 417, 418, 419, 420, 421, 423, 424 |
| 3D-footprint Homologues: | 7w1m_H, 5ei9_F, 8ssq_A, 5yel_A, 8ssu_A, 7n5w_A, 6jnm_A, 5kkq_D, 2kmk_A, 6ml4_A, 8h9h_G, 7ysf_A, 6a57_A, 2jpa_A, 1ubd_C, 3uk3_C, 1tf3_A, 8cuc_F, 7y3l_A, 1tf6_A, 1g2f_F, 5kl3_A, 7txc_E, 5k5i_A, 1llm_D, 5v3j_F, 6blw_A, 6u9q_A, 4x9j_A, 2gli_A, 1f2i_J, 4m9v_C, 6e94_A, 7y3m_I, 2lt7_A, 2wbs_A, 8gn3_A, 5yj3_D, 2drp_D, 5k5l_F |
| Binding Motifs: | M4817_1.02 CaACAGGTG |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.