Transcription Factor
| Accessions: | T135247_1.02 (CISBP 1.02) |
| Names: | T135247_1.02;, Tr4/Tr2 |
| Organisms: | Schistosoma mansoni |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Nuclear receptor |
| Length: | 1532 |
| Pfam Domains: | 548-615 Zinc finger, C4 type (two domains) 1140-1401 Ligand-binding domain of nuclear hormone receptor |
| Sequence: (in bold interface residues) | 1 IPSNIYFQLPPNIPNHGLTSLLSNVASNLSAHQNHQNNFLKPSLVPTGRTSNAQLLQLLR 60 61 NVTSSLPSSPVSYPISPRNTRNTPVLCDNNHTLSDSTSQVPIISTASSTAIPATDYSSCN 120 121 NDQTLTLNSQSNRTSSNHPTVNGPSLLPDFETLLANSNPNMSDFIYCLVQSILFNHANTR 180 181 QKFKSKKETPPLDSAALLSLLSGAGNLNPSSCSTGSLSNPLNPLSTLSSEIDSANCNIHL 240 241 RQVLESLISLSVSPAFDQSSPHNLLSNDMLDSGSLSQTFQQLTNLSNRKATTGIQKVSPS 300 301 GQILSNESSNSTNPPGNVSFDLLAQLSAAAAAAAVTPPPSNIVNQLGNLATDGFNPIFPT 360 361 DENLSSALQNLLFKQMLSINTGSNAYTSHLGPGRDSVSSISQSGQYTGLKDCRSMSNDES 420 421 NCSSEKLIPTTYSLASSFLSLHSPNSTNNCSNNNNPRSSFVRPSSRISPEPITLASSPPS 480 481 SSSTPSFICPNQSNPPTGEFYPPNETVASSPNSLLLNGCTPVGTSPNTGLNMNQTAVNLS 540 541 NDNQSWEPCKVCGDKASGRHYGVVSCEGCKGFFKRSIRGHVSYVCRSEQNCLVNKAYRNR 600 601 CQYCRLQKCLAVGMRSEAVQNERRPTNTFALNFLNDNSGNSNCTTTGGSSNMNNGGSPSP 660 661 SNNCCVSTPSITSTTTTTTTATVTTPTTTSANNSHTSTSGPSVTNVRNSSPQSQQLPYKI 720 721 EPNSEELEDDRNNHSEFTTQKSEEGQSSSHSSPSGSSRSVPLTLSGATTVGLLSSSSGGV 780 781 GSKHLDDNHFTGINKHSALSDISSSSSSSSYSATIADVEINDPNNASYLQHDIKPPVIQT 840 841 SLGLKFTPGLCSSPQATSHSLQQPPAICLSTSASSFTRQRSLTSVSSSIVNNNSTAYASA 900 901 LPAYSNMLEGCHTTNHLDPDCGIANFSRCMNRNPLLSSQLFDIPDNKRGATQESYSRRMS 960 961 MVLSTTNVRGRRSSNSSTANNMGENLHESGELIDSYRDANGHLLPKKFELTSSPDVTALR 1020 1021 PENELLNPSPKKEETNWSRSRKRKMHYSFPSDVNNNARSIRRRTQSNNSLQPDTNNSIGL 1080 1081 GDTRETCEDDDESRITECISECTKSPDDSRPNSPLVGPVLLNSMFDLNAHVFKAYQDNNN 1140 1141 NRSLSISSELASRVLFLTVDWLRRFDGLKRLPIGVQRDLVAISWSDLFVLGLCQAADQIN 1200 1201 RSQNHRSNQESNDSQSTNSLCAQNDINSTRVKQISGEQQTNSHCSITPTSSFKSNSFDSS 1260 1261 SSSHISPMKEPMDTSYLKTNCSSSSAVIELVEQLMKQFSGAEVDTHEYTYLRCMVILSSG 1320 1321 RLCINARDASLAKQITEMESRVLSEFSEFLSTRAASSTTTGSLSSKRTKPIIKRVLILTQ 1380 1381 LLSTLRYLDPKDLEEAFFSNLLGSVSIAQILPYLLESNDLFTQSQLVMNSCLPDNSLDYK 1440 1441 PGLNHVKLPNKQASRSGLEDSVTNFMGDSLPNNMTEKIDNLPSSLLLRPDQTSPQSRSAS 1500 1501 CEITATSIELNNQNTEPANSKSFVDDETNDSA |
| Interface Residues: | 557, 558, 560, 561, 567, 568, 570, 571, 574, 575, 599, 621, 623, 625 |
| 3D-footprint Homologues: | 6fbq_A, 7wnh_D, 6l6q_B, 3g9m_B, 1a6y_A, 1lo1_A, 4oln_B, 1kb2_B, 2a66_A, 8hbm_B, 2nll_B, 1lat_A, 7xv6_B, 2ff0_A, 1dsz_A, 4umm_E, 3cbb_A, 7xvn_C, 4iqr_B, 2han_A, 1hcq_E, 8cef_H, 5krb_G, 2han_B, 5cbz_E, 4tnt_B, 5e69_A, 4hn5_B, 8rm6_A, 5emc_A, 7prw_B, 5cbx_B, 3g6t_A, 1r4i_A |
| Binding Motifs: | M1497_1.02 skTGACCy |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.