Transcription Factor
| Accessions: | Q18909 (JASPAR 2024) |
| Names: | C/EBP, CCAAT/enhancer-binding protein, Q18909_CAEEL |
| Organisms: | Caenorhabditis elegans |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q18909 |
| Length: | 319 |
| Sequence: (in bold interface residues) | 1 MYSKLNYSHQKGDQALKHPHLVRLQQSEVRGFTDMPNNGASTSSAGSFARQDSLTIAASL 60 61 QQRDRERHPVDFMETELDLGDYLQVLHDLDVPTDNVDFDDAELQKCNILYDGEHPYEQPE 120 121 LNGYERHVAYGTGYRVPGDYDQDGYKMNCEVKAETPDFGATKTRRAVKRPVPYDDYQKEY 180 181 SEESSDMTDNDGSVDDSYFEPKSKKTKSAGLENFKPQTRARKYKLKADEEKAEPTYKLKR 240 241 ARNNDAVRKSRKKAKELQDKKEAEHDKMKRRIAELEGLLQSERDARRRDQDTLEQLLRNK 300 301 GPMKEQRMPQRHILENFNK |
| Interface Residues: | 240, 243, 244, 246, 247, 250, 251, 285 |
| 3D-footprint Homologues: | 6mg1_B, 8k8c_A, 2dgc_A, 8p5q_A |
| Binding Motifs: | MA1444.1 ATTTCGtAATaw MA1444.2 ATTTCGtAATa |
| Binding Sites: | MA1444.1.1 MA1444.1.10 MA1444.1.11 MA1444.1.12 MA1444.1.13 / MA1444.1.4 MA1444.1.14 / MA1444.1.15 MA1444.1.11 / MA1444.1.16 / MA1444.1.5 MA1444.1.17 MA1444.1.18 MA1444.1.19 / MA1444.1.6 MA1444.1.2 MA1444.1.20 MA1444.1.3 MA1444.1.3 / MA1444.1.4 MA1444.1.5 MA1444.1.6 MA1444.1.7 MA1444.1.8 MA1444.1.9 MA1444.1.10 MA1444.1.12 MA1444.1.13 MA1444.1.14 MA1444.1.15 MA1444.1.16 MA1444.1.17 MA1444.1.18 MA1444.1.19 MA1444.1.20 MA1444.1.7 MA1444.1.8 MA1444.1.9 MA1444.2.1 MA1444.2.10 / MA1444.2.6 MA1444.2.11 / MA1444.2.5 MA1444.2.12 MA1444.2.13 MA1444.2.14 MA1444.2.15 MA1444.2.16 MA1444.2.17 MA1444.2.18 MA1444.2.19 MA1444.2.2 MA1444.2.20 MA1444.2.3 MA1444.2.4 MA1444.2.7 MA1444.2.8 MA1444.2.9 |
| Publications: | Narasimhan K, Lambert SA, Yang AW, Riddell J, Mnaimneh S, Zheng H, Albu M, Najafabadi HS, Reece-Hoyes JS, Fuxman Bass JI, Walhout AJ, Weirauch MT, Hughes TR. Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities. Elife : (2015). [Pubmed] |
| Related annotations: | PaperBLAST |
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