Transcription Factor
| Accessions: | Q9LY00 (JASPAR 2024), T11674 (AthalianaCistrome v4_May2016) |
| Names: | Probable WRKY transcription factor 70, WRK70_ARATH, WRKY DNA-binding protein 70, AT3G56400, T11674;, WRKY70 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:WRKY |
| Length: | 294 |
| Pfam Domains: | 120-180 WRKY DNA -binding domain |
| Sequence: (in bold interface residues) | 1 MDTNKAKKLKVMNQLVEGHDLTTQLQQLLSQPGSGLEDLVAKILVCFNNTISVLDTFEPI 60 61 SSSSSLAAVEGSQNASCDNDGKFEDSGDSRKRLGPVKGKRGCYKRKKRSETCTIESTILE 120 121 DAFSWRKYGQKEILNAKFPRSYFRCTHKYTQGCKATKQVQKVELEPKMFSITYIGNHTCN 180 181 TNAETPKSKTCDHHDEIFMDSEDHKSPSLSTSMKEEDNPHRHHGSSTENDLSLVWPEMVF 240 241 EEDYHHQASYVNGKTSTSIDVLGSQDLMVFGGGGDFEFSENEHFSIFSSCSNLS |
| Interface Residues: | 126, 127, 128, 130, 131, 142, 191 |
| 3D-footprint Homologues: | 6j4f_F, 6j4g_B, 6ir8_A, 6j4e_B, 7z0u_A, 4nih_A |
| Binding Motifs: | M0810 / MA1308.1 rsCGTTGACTTTt MA1308.2 CGTTGACTTT |
| Binding Sites: | MA1308.1.13 MA1308.1.1 / MA1308.1.8 MA1308.1.14 MA1308.1.16 MA1308.1.20 MA1308.1.9 MA1308.1.10 MA1308.1.11 MA1308.1.12 MA1308.1.15 MA1308.1.17 MA1308.1.18 MA1308.1.19 MA1308.1.2 MA1308.1.3 MA1308.1.4 MA1308.1.5 MA1308.1.6 MA1308.1.7 MA1308.2.1 / MA1308.2.8 MA1308.2.10 MA1308.2.11 MA1308.2.12 MA1308.2.13 MA1308.2.14 MA1308.2.15 MA1308.2.16 MA1308.2.17 MA1308.2.18 MA1308.2.19 MA1308.2.2 MA1308.2.20 MA1308.2.3 MA1308.2.4 MA1308.2.5 MA1308.2.6 MA1308.2.7 MA1308.2.9 |
| Publications: | Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. [Pubmed] |
| Related annotations: | PaperBLAST |
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