Transcription Factor
| Accessions: | T057681_1.02 (CISBP 1.02) |
| Names: | shn, T057681_1.02; |
| Organisms: | Drosophila melanogaster |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:B1H, family:C2H2 ZF |
| Length: | 2577 |
| Pfam Domains: | 484-506 C2H2-type zinc finger 484-506 Zinc finger, C2H2 type 499-523 Zinc-finger double domain 512-536 Zinc finger, C2H2 type 1107-1125 C2H2-type zinc finger 1816-1838 Zinc finger, C2H2 type 1831-1855 Zinc-finger double domain 1844-1865 C2H2-type zinc finger 1844-1868 Zinc finger, C2H2 type 1844-1868 Zinc-finger of C2H2 type 2308-2328 C2H2-type zinc finger 2334-2358 Zinc-finger of C2H2 type |
| Sequence: (in bold interface residues) | 1 MARRKGSGRGKSTVNSRKSALETAREKTKDEPTANTSQDNKFDNNMENATTTTAKHYKTA 60 61 GKQYKTNKVNNTRRATAAAAAAAAAAATTTVTTAATPTKKRTYRETATATIVTQRSTNKA 120 121 NIAAAIALAAATEATASASASATATATDATLTASKAAATAAATTDAASGNSNSSSKPSTS 180 181 TRDKLGEVPLPTVDSNHIISNNNNNNNNNNTSNNNNNNHHSDNSISENNYEFKSRDKASL 240 241 SDSKMTLQQMAAVSSNQEPVAPNVANTMSNSSIINSQQTTVNATPATDEAPLGDRSNISR 300 301 YLHKKFKRLASTTEVDSWSATNGGGALQASGDAVRTTSLSSNSSLSPPPTTPLANGHHLM 360 361 TQQQSHQQVQQQQQQQQTPPPSVAIHEFSANFVNSNHVNAIGHEESIISNSGYKAAGRTR 420 421 TPLANSNSNTNSTSNSNSNHAANATLSPASFAQHQQLTQPTTVSPGIPGGAAAPNPACEK 480 481 SGRYVCQYCNLICAKPSVLEKHIRAHTNERPYPCDTCGIAFKTKSNLYKHCRSRSHAARA 540 541 RGLEVPADADDGLSDQDAELSNSSSELPSRAGSPYEEPINSPTPSPSTLSAAKSAYIQQP 600 601 PLPTYMQQLPLGSPAAGTLPPTTADNHHSATAQHRQSIDYKPYKPKFHNASLYSCSSKEL 660 661 QQQQQQLQIQQQQQQHQLAQQKLSIQLPLVQQPSLAHPTLSPSTQMKMKHHINSHQIQLQ 720 721 LQQQQSLLAQQSLLAAMPPGGVYYLGQPSYYNQDTAAAIHQHALAIQQFQIHLAQQQQQQ 780 781 QQQHPPLVKATPPMQQPPSLPPQQLVRANSQISSVATAPATPTPAANLSTFASSSGGKQV 840 841 NVAKVQEHISKLISQNEAIVENKEILLQKKYPKQLSRSRSFNNANSNNASQHGSNASALH 900 901 ANNSQNNTNAQMPERETKVNLAQAIFQKQQHQLQQQQQQQITQQQQQQLEQQNYYTYIQQ 960 961 QQECQQQQLEPPNGVVKRNAYKPGVVMTTPVKQQQQLPPPPSPLPMQTMQYRQDPATPVT 1020 1021 KIEQPTTAVPVMPLNLSAKPKPTLVTVPVSSLSTSSLAPTPTTSTNPTSSSKTAPPPAQV 1080 1081 NNSIIKNLLLNARGLAVPIGEGDDAVYSCPICASEFRSADDLKLHNSTYCQDASSSAPMS 1140 1141 PASSPFRSNSISLSLPELKSHMANSKNPLSLAKLAWSQLKTKRSSLVLSRLSAAQTPART 1200 1201 STVTAPTVTASAPAPAVATVTAPSSAPAPQIEALRFVDAPLPSPGPLLGKTPLVDYAQQS 1260 1261 TPRKAQDSVVITKMHEDRQFVIEAQPAKRIKTSDLVVASSSQQPTSFNFSFNNQNSSNSV 1320 1321 PELQSSKEERLRRFTSSGGSMIPISECPDLDNSPKMIRTPLLSGGSFQDVSVKVNNETGS 1380 1381 SSKERKLMALVSGSGLLGVSSGPQHFQFPPINSITAFNPLTLPPMSGGDKTTPVTPIPHV 1440 1441 PGMPGPGSLTPQMPLLPPPPQQLQLPIPSSRGRSPNRKQPSPLLLGGGSGELKALSPFGG 1500 1501 VQNVPSEFSRQPPTPAQRQALQWNSKEAPKKAPFNFLRMADNVKTTEPEVRHFNLENVIS 1560 1561 GKQQELPLTPLHVDTPNGNAPEETSPVASASASAKSKFLRPTSLPLKPGTFTPKRHHGIT 1620 1621 PTANTLPLISPETPRPSKSCVQLYLNGHAYTYLGLKCSTKMFYCTVNCPQPSYVAGMHKL 1680 1681 SMYSVWQVCEENQPHPLGFKLKQVMALYDSRQRMLGNGSSTAMAGSGKLSYNLVASQQIV 1740 1741 SSPSTSSTSSAFYQGPLKTPPTVTIAALSEANVAAKANEEAQAKKLETSPSGQPLVGGYE 1800 1801 SHEDYTYIRGRGRGRYVCSECGIRCKKPSMLKKHIRTHTDVRPFTCSHCNFSFKTKGNLT 1860 1861 KHMQSKTHFKKCIELGINPGPMPPDSEFLDVDMDFDQQSSTSAGGRTSSMAGESDSDDYS 1920 1921 DNESESSDTDESKSRQKEHEAARGLLSLSMTPPIPQSVSPYPQLQDTPLPAASPANSIGS 1980 1981 SGSQPKRLVCSFTSPKPPFDYQKQEQYYSNPEESKPKRSVANEESAPMDLTKPRGSILLI 2040 2041 SPSPVSVPAHDLPKSQAQQMHDVIFGTSGNESGFMKTLISVSDKVRISAEMEEQAKHEAE 2100 2101 GEDVQLQTYIKEHALHQAKIKQSQFSRSYLINTLYTAASPVMSSSSTLFTANSRPVMSVN 2160 2161 EVPSIEVHEVKTPEAIESPRSAPEQAPVILAQIAQEENEEPNIAEPHNANLPAAVQQPDV 2220 2221 NEFTGVLGNPTAPPTSSVTATSVSTTTAAPVAPSSTANSTQPAQRTVIVGEDGFKSSTPT 2280 2281 SKSGDLQHVSYGRGVPPAPIAGDARPTCTMCSKTFQRQHQLTLHMNIHYMERKFKCEPCS 2340 2341 ISFRTQGHLQKHERSEAHKNKVMMTSTFGVPTTSNPRPFECTDCKIAFRIHGHLAKHLRS 2400 2401 KTHVQKLECLQKLPFGTYAEIERAGISLTEIDTSDCENSLISLKLLAQKLQEKDPGKLSS 2460 2461 YTTPSGMMQLAQDAAGPVSQDSASEDGFSAAIASAIASLDNDSAGNTPKRASSMSEDETV 2520 2521 ANGLNHSLKRRLPGSFSSTGEESDNPPESSGEKRARSGQELPVPVAVPVAASAAASN |
| Interface Residues: | 494, 495, 496, 497, 498, 500, 501, 502, 523, 524, 525, 526, 527, 528, 529, 530, 1826, 1827, 1829, 1830, 1833, 1854, 1855, 1856, 1857, 1858, 1861, 2281, 2282, 2284, 2285, 2316, 2317, 2319, 2320, 2322, 2323, 2344, 2345, 2346, 2347, 2348, 2351, 2356, 2360, 2363, 2364, 2370, 2372, 2373, 2389, 2390, 2391, 2392, 2393, 2396, 2400 |
| 3D-footprint Homologues: | 1g2f_F, 3uk3_C, 2kmk_A, 2gli_A, 8gn3_A, 8h9h_G, 1llm_D, 2drp_D, 4m9v_C, 7y3m_I, 6jnm_A, 6a57_A, 8cuc_F, 7y3l_A, 6blw_A, 1f2i_J, 5kkq_D, 5ei9_F, 2jpa_A, 5kl3_A, 1ubd_C, 5k5i_A, 8ssq_A, 7txc_E, 1tf3_A, 7n5w_A, 7w1m_H, 5k5l_F, 6u9q_A, 4x9j_A, 7ysf_A, 6ml4_A, 2lt7_A, 6e94_A, 1tf6_A, 5yel_A, 2wbs_A, 5yj3_D, 5v3j_F |
| Binding Motifs: | M5189_1.02 AGGGrATTCCm |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.