Transcription Factor

						

			
Accessions: Q4H2Z3 (JASPAR 2024)

			
Names: Fragment, Q4H2Z3_CIOIN, Transcription factor protein
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H2Z3
Length: 346
Pfam Domains:    32-156 'Paired box' domain
Sequence: 
(in bold interface residues)		   1 NWGSAMAVGPSSVGHPFVGSGMAASLTPSRSGHGGVNQLGGVYVNGRPLPDQVRQQIVDQ   60
  61 AHIGVRPCDIARQLRVSHGCVSKILARYYETGSIRPGVIGGSKPKVATPRVVEKICDYKR  120
 121 QNPTMFAWEIRDRLLSEGICDHDNVPSVSSINRIVRNKAAENAKSHQQLMVPMTPSSLDN  180
 181 YSEHIGQVSRMNGFNRFASSTTALPTMQQSSHVTSQMNFNRKENKGLDYSYDCRGSTNSP  240
 241 NVATYPVLPHNQPRANCDVTISPMTSQTNTANATVSPSNSGGYSGSSFAPITTAYAPTGE  300
 301 FVDYGYQQYNQHWKFGQQHHNDGNTGKVLNLRGKEHPATLEMVSAQ
Interface Residues: 45, 77, 78, 80, 82, 83, 99, 102, 105, 147, 148, 149, 150, 152, 153, 156
3D-footprint Homologues: 1k78_A, 1pdn_C, 6pax_A
Binding Motifs: UN0462.1 yagtsawGCGTgACGstymmss
MA2113.1 GCGTgACG
			
Publications: Wada S, Tokuoka M, Shoguchi E, Kobayashi K, Di Gregorio A, Spagnuolo A, Branno M, Kohara Y, Rokhsar D, Levine M, Saiga H, Satoh N, Satou Y. A genomewide survey of developmentally relevant genes in Ciona intestinalis. II : (Genes). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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