Transcription Factor
| Accessions: | T26502 (AthalianaCistrome v4_May2016), F4K0Q7 (JASPAR 2024) |
| Names: | AT5G05550, T26502;, F4K0Q7_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:Trihelix |
| Length: | 249 |
| Pfam Domains: | 22-107 Myb/SANT-like DNA-binding domain |
| Sequence: | METTTPQSKSSVSHRPPLGREDWWSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADAV NSRHGDNSRKKTDLQCKNRVDTLKKKYKTEKAKLSPSTWRFYNRLDVLIGPVVKKSAGGV VKSAPFKNHLNPTGSNSTGSSLEDDDEDDDEVGDWEFVARKHPRVEEVDLSEGSTCRELA TAILKFGEVYERIEGKKQQMMIELEKQRMEVTKEVELKRMNMLMEMQLEIEKSKHRKRAS ASVVWQGKV |
| Binding Motifs: | M0772 hwtytCCGGCGayrw M0775 hwtyTCCGGCGayrw MA2040.1 wtCTCCGGCGahr UN0412.1 wyrtCGCCGGarawd MA2040.2 CTCCGGCGa |
| Binding Sites: | MA2040.1.10 MA2040.1.14 MA2040.1.16 MA2040.1.19 MA2040.1.20 MA2040.1.2 MA2040.1.5 MA2040.1.6 MA2040.1.1 MA2040.1.7 MA2040.1.8 MA2040.1.9 MA2040.1.11 MA2040.1.3 MA2040.1.4 MA2040.1.12 MA2040.1.13 MA2040.1.15 MA2040.1.17 MA2040.1.18 MA2040.2.10 / MA2040.2.14 / MA2040.2.2 / MA2040.2.20 / MA2040.2.3 / MA2040.2.4 MA2040.2.18 / MA2040.2.19 MA2040.2.9 MA2040.2.5 MA2040.2.11 / MA2040.2.6 MA2040.2.1 / MA2040.2.16 MA2040.2.12 MA2040.2.13 / MA2040.2.15 MA2040.2.17 MA2040.2.7 MA2040.2.8 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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