Transcription Factor

Accessions: YCL067C (JASPAR 2024)
Names: A0A1S7HM56_9SACH, HMLalpha2_A, MATALPHA2_A (YCR039C, YCL067C
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 211
Pfam Domains: 146-195 Homeobox domain
154-192 Homeobox KN domain
Sequence:
(in bold interface residues)
1 MNKIPINLLLNPAQQDHSQEKDKQAFKALLELCSSLPPSVEKLDQKPLELECSLSSVINE 60
61 LDLSGEKSNILHTTRQLSSTLSELLKKLQSFNSKVKQPSASPLPQHTVKLKKKLKRNIAF 120
121 NVLTQDMMTSHTRSTKPYRGNRLPKTTVRTLEDWFNRNVDCPYLKRSSLRTLIRQTNLSA 180
181 LQIKNWVSNRRRKERSLVASLNPSKSFRKEI
Interface Residues: 139, 141, 142, 145, 181, 182, 184, 185, 188, 189, 192, 193, 196
3D-footprint Homologues: 1mnm_C, 1puf_A, 1le8_B, 2ld5_A, 3a01_E, 1k61_B, 7psx_B, 5hod_A, 7q3o_C, 6es3_K, 6fqp_B, 4xrm_B, 6fqq_E, 1puf_B
Binding Motifs: MA0328.1 CATGTAAwT
Publications: Zhu J, Zhang M.Q. SCPD: a promoter database of the yeast Saccharomyces cerevisiae. Bioinformatics (Oxford, England) 15:607-11 (). [Pubmed]
Related annotations: PaperBLAST

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