Transcription Factor
| Accessions: | T000627_1.02 (CISBP 1.02), P93007 (JASPAR 2024) |
| Names: | AT2G33710, T000627_1.02;, EF112_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:AP2 |
| Length: | 218 |
| Pfam Domains: | 70-119 AP2 domain |
| Sequence: (in bold interface residues) | 1 MHSGKRPLSPESMAGNREEKKELCCCSTLSESDVSDFVSELTGQPIPSSIDDQSSSLTLQ 60 61 EKSNSRQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHK 120 121 AKLNFPEHIRVNPTQLYPSPATSHDRIIVTPPSPPPPIAPDILLDQYGHFQSRSSDSSAN 180 181 LSMNMLSSSSSSLNHQGLRPNLEDGENVKNISIHKRRK |
| Interface Residues: | 74, 76, 77, 78, 82, 84, 86, 91, 93, 95 |
| 3D-footprint Homologues: | 5wx9_A, 7wq5_A, 1gcc_A, 7et4_D |
| Binding Motifs: | M0018_1.02 gscGCCGcca MA1002.1 gscGCCGcca MA1245.1 ccdcCkCCGCCGymr MA1245.2 dcCGCCGCCry MA1245.3 cCGCCGCCr |
| Binding Sites: | MA1245.1.2 MA1245.1.9 MA1245.1.10 MA1245.1.13 / MA1245.1.6 MA1245.1.14 MA1245.1.15 MA1245.1.18 MA1245.1.4 MA1245.1.3 / MA1245.1.5 MA1245.1.7 MA1245.1.1 MA1245.1.16 MA1245.1.17 MA1245.1.11 MA1245.1.12 MA1245.1.8 MA1245.1.19 MA1245.1.20 MA1245.2.11 / MA1245.2.19 MA1245.2.12 / MA1245.2.20 MA1245.2.14 MA1245.2.15 MA1245.2.16 MA1245.2.19 MA1245.2.20 MA1245.2.10 / MA1245.2.7 MA1245.2.4 / MA1245.2.8 MA1245.2.5 / MA1245.2.9 MA1245.2.15 / MA1245.2.9 MA1245.2.10 / MA1245.2.18 MA1245.2.1 MA1245.2.11 / MA1245.2.6 MA1245.2.12 MA1245.2.13 / MA1245.2.7 MA1245.2.14 / MA1245.2.8 MA1245.2.16 MA1245.2.17 MA1245.2.2 MA1245.2.2 / MA1245.2.3 MA1245.2.4 MA1245.2.5 MA1245.2.3 / MA1245.2.6 MA1245.2.17 MA1245.2.13 MA1245.2.18 MA1245.3.4 MA1245.3.18 MA1245.3.17 MA1245.3.19 / MA1245.3.20 / MA1245.3.7 MA1245.3.11 / MA1245.3.12 / MA1245.3.14 / MA1245.3.15 / MA1245.3.6 MA1245.3.5 MA1245.3.9 MA1245.3.16 MA1245.3.1 MA1245.3.10 MA1245.3.13 MA1245.3.2 MA1245.3.3 MA1245.3.8 |
| Publications: | Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed] |
| Related annotations: | PaperBLAST |
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