Transcription Factor
| Accessions: | T116976_1.02 (CISBP 1.02) |
| Names: | ATMYR1, T116976_1.02; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Myb/SANT |
| Length: | 400 |
| Pfam Domains: | 47-98 Myb-like DNA-binding domain 145-191 MYB-CC type transfactor, LHEQLE motif |
| Sequence: (in bold interface residues) | 1 MYYHNQHQGKSILSSSRMPISSERHPFLRGNGTGDSGLILSTDAKPRLKWTPDLHERFVE 60 61 AVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRLSKNLNGQANSSLNKTSVMTMV 120 121 EENPPEVDESHSESLSIGPQPSMNLPISDALQMQIEVQRRLHEQLERHLQLRIEAQGKYL 180 181 QSILEKAQETLGRQNLGAAGIEATKAQLSELVSKVSADYPDSSFLEPKELQNLHHQQMQK 240 241 TYPPNSSLDSCLTSSEGTQKAPKMLDNRLGLRTYIGDSTSEQKEIMEEPFFHRMELTWAE 300 301 EESLRENHNRPYLSTMVNNAEPRISSSRRSPGRLSIGVGLHEHRGRSSNNSEYTEERFNE 360 361 NNEDCKLETHTRTALDLNTHDENYGTTRPKQFDLNGFSWN |
| Interface Residues: | 47, 87, 88, 91, 92, 95, 96 |
| 3D-footprint Homologues: | 8xas_E, 6j5b_C, 6qec_A, 7d3t_D |
| Binding Motifs: | M1341_1.02 ssssGaATmt |
| Related annotations: | PaperBLAST |
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