Transcription Factor
| Accessions: | A0A1D6EAS7 (JASPAR 2024) |
| Names: | A0A1D6EAS7_MAIZE |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 624 |
| Pfam Domains: | 381-425 Helix-loop-helix DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MSQEGANLPQEVVGSHDQATAPHGSIPAPADSNPSSVSNLASAVNNGGSSECASPAVLSA 60 61 GEDNNAASSKTASPAVLSAGEDNNAASSKTASPAVLHAADDNNAASKIAGPAVLLAGEEN 120 121 KAKLKLASPASLLAGEEKGNNADEFKLASPRMLHDCDDNNAGSHAGVRNCNAAQSKLANP 180 181 AVLHAGDDKKGGSKIAGPEVPHASVTSTTGSKLNGPAALHAGNDNDSGGSRLPNPAVLHA 240 241 SKDMDNNAGRPKFASPVLLHAGEDNKARTKLAIQAGGGGNAGAGSSRLTRSAALHAGKDN 300 301 GAGSKPAIQVVPRLHAGGKDNNAGSFKAARPSAADSGESNAKEGKSNVAGEQRAREAGVG 360 361 CGGGKGNAAAVEDVDHDLHIFTERERRKKMKNMFSTLHALLPQLPDKADKATIVGEAVTY 420 421 IKTLEGTVQKLEKLKLERKRALAAQQQLMAGAGSNRASSARHPAPAPSSPSSSSREANVA 480 481 DMVHGWHAQQAAANKALAAEAGAGGSSSAAASLPRGAVPFPAPAAGFQTWSGQNVVVSVA 540 541 SNEAYINLHSPRQPAGTLTKALFVLERHRIDVVTTTISTQDGFHMYGIHARVNSASASAR 600 601 FPENLCAEDRFKLAVSEMLQLINI |
| Interface Residues: | 379, 380, 382, 383, 386, 387, 391, 410 |
| 3D-footprint Homologues: | 5gnj_I, 7ssa_L, 1am9_A, 5i50_B, 7xq5_A, 6g1l_A, 5eyo_A, 7d8t_A, 8osl_O, 4h10_B |
| Binding Motifs: | MA1816.1 sskCACGTGmss MA1816.2 CACGTG |
| Binding Sites: | MA1816.2.1 / MA1816.2.10 / MA1816.2.11 / MA1816.2.12 / MA1816.2.13 / MA1816.2.14 / MA1816.2.15 / MA1816.2.16 / MA1816.2.17 / MA1816.2.18 / MA1816.2.19 / MA1816.2.2 / MA1816.2.20 / MA1816.2.3 / MA1816.2.4 / MA1816.2.5 / MA1816.2.6 / MA1816.2.7 / MA1816.2.8 / MA1816.2.9 MA1816.1.1 MA1816.1.10 MA1816.1.11 MA1816.1.12 MA1816.1.13 MA1816.1.14 MA1816.1.15 MA1816.1.16 MA1816.1.17 MA1816.1.18 MA1816.1.19 MA1816.1.2 MA1816.1.20 MA1816.1.3 MA1816.1.4 MA1816.1.5 MA1816.1.6 MA1816.1.7 MA1816.1.8 MA1816.1.9 MA1816.1.17 MA1816.1.18 MA1816.1.19 MA1816.1.20 |
| Publications: | de Vetten N. C., Ferl R. J. Characterization of a maize G-box binding factor that is induced by hypoxia. Plant J. 7:589-601 (1995). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.