Transcription Factor
| Accessions: | T22877 (AthalianaCistrome v4_May2016), Q94AW5 (JASPAR 2024) |
| Names: | AT5G25190, ESE3, T22877;, ERF03_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:AP2-EREBP |
| Length: | 181 |
| Pfam Domains: | 7-55 AP2 domain |
| Sequence: (in bold interface residues) | 1 MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60 61 TNFPYNPNAIPTSSSKLLSATLTAKLHKCYMASLQMTKQTQTQTQTQTARSQSADSDGVT 120 121 ANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIELCSVLPTQT 180 181 L |
| Interface Residues: | 12, 14, 16, 22, 24, 31, 33 |
| 3D-footprint Homologues: | 1gcc_A, 5wx9_A, 7wq5_A |
| Binding Motifs: | M0049 cgghgghggCGGyGGmGgw M0061 kygrCGGCGGmGgwg UN0363.1 cwcCtCCGCCGcc |
| Binding Sites: | UN0363.1.1 UN0363.1.10 UN0363.1.11 UN0363.1.12 UN0363.1.13 UN0363.1.14 UN0363.1.15 UN0363.1.16 UN0363.1.17 UN0363.1.18 UN0363.1.19 UN0363.1.2 UN0363.1.20 UN0363.1.3 UN0363.1.4 UN0363.1.5 UN0363.1.6 UN0363.1.7 UN0363.1.8 UN0363.1.9 |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.