Transcription Factor
| Accessions: | UP00343A (UniPROBE 20160601) |
| Names: | Not Available, Usv1 |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Not Av |
| Description: | Putative transcription factor containing a C2H2 zinc finger; mutation affects transcriptional regulation of genes involved in protein folding, ATP binding, and cell wall biosynthesis |
| Length: | 144 |
| Pfam Domains: | 40-65 C2H2-type zinc finger 40-65 Zinc finger, C2H2 type 57-82 Zinc-finger double domain 71-94 C2H2-type zinc finger 71-94 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 ENTTNRNTAGVLTSSNGNFATNSVAASTPKRSKSARRKTFKCTGYDGCTMSFTRAEHLAR 60 61 HIRKHTGEKPFQCPACLKFFSRVDNLKQHRESVHAHKNHHSTSSHQRKPSSSSLSSSSSA 120 121 SSSSSASSSTSYSDPYRKTNINSG |
| Interface Residues: | 31, 32, 33, 34, 37, 51, 53, 54, 55, 56, 57, 60, 61, 68, 81, 82, 83, 84, 85, 86, 87, 88, 89, 92 |
| 3D-footprint Homologues: | 7ysf_A, 5kkq_D, 8ssq_A, 7w1m_H, 8ssu_A, 5und_A, 3uk3_C, 8cuc_F, 2kmk_A, 7y3l_A, 7n5w_A, 6blw_A, 2lt7_A, 1ubd_C, 6u9q_A, 5yel_A, 4x9j_A, 2i13_A, 1mey_C, 7txc_E, 5kl3_A, 2wbs_A, 1f2i_J, 5ei9_F, 2jpa_A, 6jnm_A, 1g2f_F, 6a57_A, 5v3j_F, 2gli_A, 1llm_D, 8h9h_G, 7eyi_G, 4m9v_C, 7y3m_I, 6e94_A, 6wmi_A, 1tf3_A, 1tf6_A, 5k5i_A, 6ml4_A, 8gn3_A, 1yuj_A, 5yj3_D, 2drp_D |
| Binding Motifs: | UP00343A_1 dwwttmCCCCTGAAyttkks |
| Binding Sites: | CCCCTGGC ACCCCTGA ATAAGGGG ATCAGGGG CAGGGGGA CAGGGGGG CAGGGGTA CCAGGGGG CCCCCTGA CCCCCTTA CCCCTGAA CCCCTGAC CCCCTGAG CCCCTTAA GCCCCTGA GTACCTGA GTCCCTGA TCAGGGGA AACAGGGG ACCCCTTA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.