Transcription Factor

						

			
Accessions: T073922_1.02 (CISBP 1.02)

			
Names: LIN54, T073922_1.02;
Organisms: Tarsius syrichta
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:CxC
Length: 747
Pfam Domains:   522-560 Tesmin/TSO1-like CXC domain
  594-632 Tesmin/TSO1-like CXC domain
Sequence: 
(in bold interface residues)		   1 MEVVPAEVNSLLPEEIMDTGITLVDDDSIEAVIVSSPIPMETELEEIVNINSTGDSAATP   60
  61 ISTEPITVYSNHTNQVAVNTTVTKADSNTTVKPAFPSGLQKLGAQTPVTISANQIILNKV  120
 121 SQTSDLKLGNQTLKPDGQKLILTTLGKSGSPIVLALPHSQLPQAQKVTAQTQSGDAKLPP  180
 181 QQIKVVTVGGRPEVKPVIGVSALTPGSQLINPTAQPSVLQTQQLKTVQIAKKPRTPTSGP  240
 241 VITKLIFAKPINSKAVTGQTTQVSPPVIAGRVLSQSTPGTPSKTITISESGVIGSALNST  300
 301 TQTPNKIAISPLKSPNKAVKSTVQTITVGGVSTSQFKTIIPLATAPNVQQIQVPGSKFHY  360
 361 VRLVTATTASSSTQPVSQNPTTNTQPLQQAKPVVVNTTPVRMSVPIVSAQAVKQVVPKPI  420
 421 NPTSQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGAGNVGYFVLPAQYVTQ  480
 481 LQQSSYVSIASSSNFTGTSSIQTQARLPFNGIIPSESASRPRKPCNCTKSLCLKLYCDCF  540
 541 ANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCN  600
 601 CKRSGCLKNYCECYERKIMCSICKCIGCKNEESPERKTVMHLADAAEVRVQQQTAAKTKL  660
 661 SSQISDLLTRPAPALSSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGKSKAAAERMI  720
 721 LEEFGRCLMSVINSAGKAKSDPCAMNC
Interface Residues: 41, 42, 51, 52, 53, 536, 610
3D-footprint Homologues: 7s03_A, 5fd3_A, 4rkh_F
Binding Motifs: M0595_1.02 awttyraawt
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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