Transcription Factor

						

			
Accessions: Q4H3J0 (JASPAR 2024)

			
Names: Q4H3J0_CIOIN
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H3J0
Length: 575
Pfam Domains:   216-308 Fork head domain
Sequence: 
(in bold interface residues)		   1 MEVTGHHPGRVLSPVDVYQGRLNHTPQRVGHPQLSQQRSLPVLPHQYSLGNHHQPQLQHS   60
  61 HSIEQPPHHHQMPHPQPFQIQPNSHVLQCLQQVNKGEMPARPNSSEPALNAPLQPLHHSH  120
 121 IQRSPNGEAVPAMEELRNENANNNNSAEGVMDGNTSAMSDGSNADLAVEHNLSIGAVSGA  180
 181 PETPPSTEEEGSDSTNGSGGKKQDNGGALGHRRPEKPPYSYIALIVMAIQSSPAKKLTLS  240
 241 EIYNFLQTRFEFFRGAYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTIDPASEFMF  300
 301 EEGSFRRRPRGFRRKCQALKPYGIFGGGPGLIGHQGYGPPHEMFGAGGMPHGAMPPPSHH  360
 361 RPNLMGFDTAGMNAAAAASAHFFNGAAAAAVAANGITSPQTTSPTLPIPPKEPGTPHSPH  420
 421 NHSNPYSSNCAEVSTGTNTSVQVSPSMSAVANHPHYSPGAMFSWPGATSQSHGTYMRQNP  480
 481 PTPNGIPDPHTHAMMNGNVNGSVGQRMEYHHPFYATSRDSHLAYEAPTMKFKTECAMDPY  540
 541 STNGMDRKPYPAMPTPIPVASGYSNGYYDTKSCAM
Interface Residues: 211, 213, 256, 259, 261, 262, 263, 265, 266, 267, 269, 270, 279, 286, 310
3D-footprint Homologues: 7yz7_A, 7yzg_A, 7yzb_A, 3l2c_A, 7vox_H, 2hdc_A, 7tdw_A, 3g73_A, 6el8_A, 7tdx_A, 6nce_A, 2uzk_A, 7vou_C, 2a07_J, 7yze_A, 7cby_C, 3co6_C, 6ako_C, 2c6y_A, 3qrf_G
Binding Motifs: MA1864.1 wwwwawaTAAAyAwwyamah
MA1864.2 TAAAyA
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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