Transcription Factor

Accessions: Q39234 (JASPAR 2024), T04509 (AthalianaCistrome v4_May2016)
Names: AtbZIP22, bZIP transcription factor 22, TGA3_ARATH, Transcription factor TGA3, AT1G22070, T04509;, TGA3
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:bZIP
Length: 384
Pfam Domains: 97-137 bZIP transcription factor
98-143 Basic region leucine zipper
183-259 Seed dormancy control
Sequence:
(in bold interface residues)
1 MEMMSSSSSTTQVVSFRDMGMYEPFQQLSGWESPFKSDINNITSNQNNNQSSSTTLEVDA 60
61 RPEADDNNRVNYTSVYNNSLEAEPSSNNDQDEDRINDKMKRRLAQNREAARKSRLRKKAH 120
121 VQQLEESRLKLSQLEQELVRARQQGLCVRNSSDTSYLGPAGNMNSGIAAFEMEYTHWLEE 180
181 QNRRVSEIRTALQAHIGDIELKMLVDSCLNHYANLFRMKADAAKADVFFLMSGMWRTSTE 240
241 RFFQWIGGFRPSELLNVVMPYVEPLTDQQLLEVRNLQQSSQQAEEALSQGLDKLQQGLVE 300
301 SIAIQIKVVESVNHGAPMASAMENLQALESFVNQADHLRQQTLQQMSKILTTRQAARGLL 360
361 ALGEYFHRLRALSSLWAARPREHT
Interface Residues: 106, 107, 109, 110, 113, 114
3D-footprint Homologues: 1dh3_C, 2dgc_A
Binding Motifs: M0212 / MA1336.1 drTGACGTCAkCaw
M0226 tGmTGACGTCAyh
MA1336.2 rTGACGTCAkC
Binding Sites: MA1336.1.3
MA1336.1.12
MA1336.1.16
MA1336.1.11
MA1336.1.8
MA1336.1.14
MA1336.1.6
MA1336.1.19
MA1336.1.10
MA1336.1.20
MA1336.1.15
MA1336.1.4
MA1336.1.18
MA1336.1.1 / MA1336.1.2
MA1336.1.5
MA1336.1.17
MA1336.1.13
MA1336.1.9
MA1336.1.7
MA1336.2.1 / MA1336.2.2
MA1336.2.10
MA1336.2.11
MA1336.2.12
MA1336.2.13
MA1336.2.14
MA1336.2.15
MA1336.2.16
MA1336.2.17
MA1336.2.18
MA1336.2.19
MA1336.2.20
MA1336.2.3
MA1336.2.4
MA1336.2.5
MA1336.2.6
MA1336.2.7
MA1336.2.8
MA1336.2.9
Publications: Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed]
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.