Transcription Factor

						

			
Accessions: 4xlp_F (3D-footprint 20231221)

			
Names: RNA polymerase sigma factor SigA, SIGA_THEAQ
Organisms: Thermus aquaticus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: Q9EZJ8
Length: 345
Pfam Domains:      1-35 Sigma-70 factor, region 1.2
  109-179 Sigma-70 region 2 
  188-266 Sigma-70 region 3
  279-331 Sigma-70, region 4
Sequence: 
(in bold interface residues)		   1 DPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGT   60
  61 ARIQKIPGLKEKPDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSI  120
 121 AKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQARTI  180
 181 RIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSLE  240
 241 TPIGDEKDSFYGDFIPDENLPSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDG  300
 301 REHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE
Interface Residues: 305, 306, 315, 316, 317, 318, 320, 321
3D-footprint Homologues: 3n97_A, 6ido_B, 8cyf_B
Binding Motifs: 4xlp_F CTTGAcannnnnnnnnnnnTnTGCT
Binding Sites: 4xlp_O
4xlp_P
			
Publications: Bae B, Feklistov A, Lass-Napiorkowska A, Landick R, Darst SA. Structure of a bacterial RNA polymerase holoenzyme open promoter complex. Elife : (2015). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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