Transcription Factor
| Accessions: | T023815_1.02 (CISBP 1.02), Q84LG2 (JASPAR 2024), T01760 (AthalianaCistrome v4_May2016) |
| Names: | bZIP68, T023815_1.02;, AtbZIP68, bZIP transcription factor 68, BZP68_ARATH, AT1G32150, T01760; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:bZIP, ecotype:Col-0, experiment type: DAP-seq |
| Length: | 389 |
| Pfam Domains: | 1-205 G-box binding protein MFMR 293-355 bZIP transcription factor 297-345 Basic region leucine zipper |
| Sequence: (in bold interface residues) | 1 MGSSEMEKSGKEKEPKTTPPSTSSSAPATVVSQEPSSAVSAGVAVTQDWSGFQAYSPMPP 60 61 HGYVASSPQPHPYMWGVQHMMPPYGTPPHPYVTMYPPGGMYAHPSLPPGSYPYSPYAMPS 120 121 PNGMAEASGNTGSVIEGDGKPSDGKEKLPIKRSKGSLGSLNMIIGKNNEAGKNSGASANG 180 181 ACSKSAESGSDGSSDGSDANSQNDSGSRHNGKDGETASESGGSAHGPPRNGSNLPVNQTV 240 241 AIMPVSATGVPGPPTNLNIGMDYWSGHGNVSGAVPGVVVDGSQSQPWLQVSDEREIKRQR 300 301 RKQSNRESARRSRLRKQAECDELAQRAEVLNGENSSLRAEINKLKSQYEELLAENSSLKN 360 361 KFSSAPSLEGGDLDKNEQEPQRSTRQDVA |
| Interface Residues: | 298, 301, 302, 304, 305, 306, 308, 309, 310, 312, 313 |
| 3D-footprint Homologues: | 6mg1_B, 7x5e_E, 1gd2_G, 4eot_A, 2wt7_A, 2wt7_B, 2dgc_A, 5t01_B, 1dh3_C |
| Binding Motifs: | M0255_1.02 hsacgTGkm MA0968.1 hsacgTGkm M0193 / MA0968.2 / MA1347.1 tGCCACGTsasmwwh MA0968.3 tGCCACGTsa |
| Binding Sites: | MA1347.1.1 MA1347.1.17 MA1347.1.9 MA1347.1.8 MA1347.1.2 MA1347.1.6 MA1347.1.3 / MA1347.1.5 MA1347.1.7 MA1347.1.4 MA1347.1.18 MA1347.1.19 MA1347.1.11 MA1347.1.16 MA1347.1.15 MA1347.1.20 MA1347.1.10 MA1347.1.13 MA1347.1.12 MA1347.1.14 |
| Publications: | Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed] Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.. Plant J. 13:489-505 (1998). [Pubmed] |
| Related annotations: | PaperBLAST |
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