Transcription Factor

Accessions: T023815_1.02 (CISBP 1.02), Q84LG2 (JASPAR 2024), T01760 (AthalianaCistrome v4_May2016)
Names: bZIP68, T023815_1.02;, AtbZIP68, bZIP transcription factor 68, BZP68_ARATH, AT1G32150, T01760;
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: experiment type:PBM, family:bZIP, ecotype:Col-0, experiment type: DAP-seq
Length: 389
Pfam Domains: 1-205 G-box binding protein MFMR
293-355 bZIP transcription factor
297-345 Basic region leucine zipper
Sequence:
(in bold interface residues)
1 MGSSEMEKSGKEKEPKTTPPSTSSSAPATVVSQEPSSAVSAGVAVTQDWSGFQAYSPMPP 60
61 HGYVASSPQPHPYMWGVQHMMPPYGTPPHPYVTMYPPGGMYAHPSLPPGSYPYSPYAMPS 120
121 PNGMAEASGNTGSVIEGDGKPSDGKEKLPIKRSKGSLGSLNMIIGKNNEAGKNSGASANG 180
181 ACSKSAESGSDGSSDGSDANSQNDSGSRHNGKDGETASESGGSAHGPPRNGSNLPVNQTV 240
241 AIMPVSATGVPGPPTNLNIGMDYWSGHGNVSGAVPGVVVDGSQSQPWLQVSDEREIKRQR 300
301 RKQSNRESARRSRLRKQAECDELAQRAEVLNGENSSLRAEINKLKSQYEELLAENSSLKN 360
361 KFSSAPSLEGGDLDKNEQEPQRSTRQDVA
Interface Residues: 298, 301, 302, 304, 305, 306, 308, 309, 310, 312, 313
3D-footprint Homologues: 6mg1_B, 7x5e_E, 1gd2_G, 4eot_A, 2wt7_A, 2wt7_B, 2dgc_A, 5t01_B, 1dh3_C
Binding Motifs: M0255_1.02 hsacgTGkm
MA0968.1 hsacgTGkm
M0193 / MA0968.2 / MA1347.1 tGCCACGTsasmwwh
MA0968.3 tGCCACGTsa
Binding Sites: MA1347.1.1
MA1347.1.17
MA1347.1.9
MA1347.1.8
MA1347.1.2
MA1347.1.6
MA1347.1.3 / MA1347.1.5
MA1347.1.7
MA1347.1.4
MA1347.1.18
MA1347.1.19
MA1347.1.11
MA1347.1.16
MA1347.1.15
MA1347.1.20
MA1347.1.10
MA1347.1.13
MA1347.1.12
MA1347.1.14
Publications: Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed]

Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.. Plant J. 13:489-505 (1998). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.