Transcription Factor
| Accessions: | T061524_1.02 (CISBP 1.02) |
| Names: | slr-2, T061524_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 426 |
| Pfam Domains: | 61-82 Zinc-finger double domain |
| Sequence: (in bold interface residues) | 1 MSKSEHFVSKENWQHLIMKPGPSNLALPTTQKFRQTSNGRTMKQTWTCGVCRKELSSKRS 60 61 YTEHMNIHNKSRPFQCEHCVYAAASQMTLHRHKLRNHTPKAEWGYRCPYCDDAYMEPAGY 120 121 QQHVQQRHPGLSATYGCPFRICKFTSKSQRHFREHLVKHDRSDKIEEGVDPCALSNQQLV 180 181 RYMVLDEMGIGFQRGYTSYSSSSGASSKPPTVTIRARTNVTIAPKIQGVVTSSQPPPVVI 240 241 CRNDEPKIVWHLEKMCNKKEDISRGNPVSIPPQRLLTHHPPPPQSTRYYVSSHATSSSVT 300 301 SLHNTSTSSLMTSSTTYVEPLPQTYSEINPEFECEADEDDDYLMEAGEAGEAEAEEEEEE 360 361 AENDVIEGEYEDDGPPVLESFGNVSIQQPIQHLIMMEEQWSEDEVASSPTADGSVFPNGL 420 421 IDEELD |
| Interface Residues: | 29, 30, 31, 32, 34, 35, 38, 41, 46, 56, 57, 58, 59, 60, 62, 63, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 115, 116, 117, 118, 119, 120, 121, 122, 126, 146, 147, 148, 149, 151, 154, 155, 158 |
| 3D-footprint Homologues: | 8ssu_A, 5kkq_D, 8ssq_A, 7w1m_H, 7ysf_A, 1ubd_C, 2kmk_A, 3uk3_C, 7y3l_A, 7n5w_A, 8cuc_F, 1llm_D, 8gn3_A, 4x9j_A, 6u9q_A, 1mey_C, 7txc_E, 5ei9_F, 2gli_A, 1f2i_J, 6wmi_A, 5und_A, 1g2f_F, 8h9h_G, 7eyi_G, 7y3m_I, 2lt7_A, 6e94_A, 2i13_A, 6ml4_A, 2wbs_A, 5k5l_F, 5yel_A, 5yj3_D, 5k5i_A, 1tf6_A, 5v3j_F, 2drp_D |
| Binding Motifs: | M0497_1.02 TTGyAGTy |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.