Transcription Factor
| Accessions: | T23597 (AthalianaCistrome v4_May2016), Q9LY29 (JASPAR 2024) |
| Names: | AT5G07310, ERF115, T23597;, EF115_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:AP2-EREBP |
| Length: | 263 |
| Pfam Domains: | 91-140 AP2 domain |
| Sequence: (in bold interface residues) | 1 MANSGNYGKRPFRGDESDEKKEADDDENIFPFFSARSQYDMRAMVSALTQVIGNQSSSHD 60 61 NNQHQPVVYNQQDPNPPAPPTQDQGLLRKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGT 120 121 FETAEAAALAYDNAALKFKGSKAKLNFPERAQLASNTSTTTGPPNYYSSNNQIYYSNPQT 180 181 NPQTIPYFNQYYYNQYLHQGGNSNDALSYSLAGGETGGSMYNHQTLSTTNSSSSGGSSRQ 240 241 QDDEQDYARYLRFGDSSPPNSGF |
| Interface Residues: | 96, 98, 99, 100, 104, 106, 108, 110, 113, 115, 117 |
| 3D-footprint Homologues: | 5wx9_A, 7wq5_A, 1gcc_A, 7et4_D |
| Binding Motifs: | M0030 gmrrykrCGGCGGmg M0081 CCGCCGYcrycgCCg MA2013.1 cdyCGCCGCCGCmrc MA2013.2 yCGCCGCCGCm |
| Binding Sites: | MA2013.1.4 MA2013.2.10 / MA2013.2.11 / MA2013.2.17 / MA2013.2.9 MA2013.2.16 MA2013.2.12 MA2013.1.1 MA2013.1.10 MA2013.1.11 MA2013.1.12 MA2013.1.13 MA2013.1.14 MA2013.1.15 MA2013.1.16 MA2013.1.17 MA2013.1.18 MA2013.1.19 MA2013.1.2 MA2013.1.20 MA2013.1.3 MA2013.1.5 MA2013.1.6 MA2013.1.7 MA2013.1.8 MA2013.1.9 MA2013.2.1 MA2013.2.13 MA2013.2.14 / MA2013.2.3 MA2013.2.15 MA2013.2.18 MA2013.2.19 MA2013.2.2 MA2013.2.20 MA2013.2.4 MA2013.2.5 MA2013.2.6 MA2013.2.7 MA2013.2.8 |
| Publications: | Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed] |
| Related annotations: | PaperBLAST |
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