Transcription Factor
| Accessions: | T086795_1.02 (CISBP 1.02) |
| Names: | GCM1, T086795_1.02; |
| Organisms: | Tetraodon nigroviridis |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:GCM |
| Length: | 464 |
| Pfam Domains: | 36-175 GCM motif protein |
| Sequence: (in bold interface residues) | 1 MSRAEEREDADCVCSVGMKFAWDINDPKLPQQDMKQFDTFQEWTDGYVRFIYSAEDKNAQ 60 61 RHLSGWAMRNTNNHNCQILKKSCLGVVICSRGCSLPDGSRLQLRPAICDKARQKQQKKLC 120 121 PSCSATLELLPCRGHSGYPVTNFWRVDGKAIFFQAKGVHDHPKPESKSETEARRSSVKRR 180 181 VNSPPFAPKRRLMETQVSAPGLGPALLSCVDPADRISFIEPNFPQHYPAFQSPEPYYSPH 240 241 NSLGDVPSGIQKPSNPRLYMGRPGYEFQGYLTSPSYPMTSDLCDPSCRRSEPDLRVAPVL 300 301 GSSSSSTPSSGPLSTSSTFEPQGKPPAGWKDLLKTTGPYGDNHHYYGAEYPCRYPGNAPG 360 361 SPAALQTIITTTTKVSYQPCPKPPSGLPSYQSCAPPKAPGLPSCSTLLDDTSSSYSTEVK 420 421 VMEESGGVIKSLSFQPEPLPTKTERADGYDYRYTYPNTYRYDDY |
| Interface Residues: | 70, 71, 72, 74, 107, 138, 139, 152, 154, 159, 163, 167, 171, 183, 184, 194, 195 |
| 3D-footprint Homologues: | 1odh_A, 3a5u_B |
| Binding Motifs: | M0815_1.02 ATrCGGGy |
| Related annotations: | PaperBLAST |
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