Transcription Factor
| Accessions: | Q8VDK3 (JASPAR 2024) |
| Names: | E74-like factor 5, ELF5_MOUSE, ETS-related transcription factor Elf-5 |
| Organisms: | Mus musculus |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 253 |
| Pfam Domains: | 37-118 Sterile alpha motif (SAM)/Pointed domain 162-243 Ets-domain |
| Sequence: (in bold interface residues) | 1 MLDSVTHSTFLPNASFCDPLMPWTDLFSNEDYYPAFEHQTACDSYWTSVHPEYWTKRHVW 60 61 EWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQEEFIEAAGICGEYLYFILQNIRSQGY 120 121 SFFNDAEETKTGIKDYADSSCLKTSGIKSQDCHSRTSLQSSHLWEFVRDLLLSPEENCGI 180 181 LEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYK 240 241 FGKNAHGWQEEKL |
| Interface Residues: | 215, 216, 218, 219, 220, 222, 223, 236 |
| 3D-footprint Homologues: | 1dux_F, 7jsa_J, 3zp5_A, 8ee9_F, 4mhg_A, 2stt_A, 4uno_A, 3jtg_A, 4l18_B, 4lg0_B, 1yo5_C, 4bqa_A, 1awc_A, 4iri_A, 1bc8_C |
| Binding Motifs: | MA0136.3 rgAAGGAAGTrr MA0136.4 AAGGAAGT |
| Binding Sites: | MA0136.4.10 MA0136.4.13 / MA0136.4.14 MA0136.4.18 MA0136.3.1 / MA0136.3.2 MA0136.3.10 / MA0136.3.14 MA0136.3.11 / MA0136.3.16 MA0136.3.12 MA0136.3.13 / MA0136.3.19 MA0136.3.14 / MA0136.3.20 MA0136.3.15 MA0136.3.16 MA0136.3.17 MA0136.3.18 MA0136.3.19 MA0136.3.2 MA0136.3.20 MA0136.3.3 / MA0136.3.4 MA0136.3.4 / MA0136.3.5 MA0136.3.5 / MA0136.3.6 MA0136.3.6 MA0136.3.7 MA0136.3.12 / MA0136.3.8 MA0136.3.9 MA0136.3.1 MA0136.3.10 MA0136.3.11 MA0136.3.13 MA0136.3.15 MA0136.3.17 MA0136.3.18 MA0136.3.3 MA0136.3.8 MA0136.3.9 MA0136.4.1 / MA0136.4.5 / MA0136.4.7 / MA0136.4.8 MA0136.4.11 MA0136.4.12 MA0136.4.15 / MA0136.4.16 MA0136.4.17 MA0136.4.19 MA0136.4.2 MA0136.4.20 MA0136.4.3 MA0136.4.4 MA0136.4.6 MA0136.4.9 |
| Publications: | Wei G-H, Badis G, Berger MF, Kivioja T, Palin K, Enge M, Bonke M, Jolma A, Varjosalo M, Gehrke AR, Yan J, Talukder S, Turunen M, Taipale M, Stunnenberg HG, Ukkonen E, Hughes TR, Bulyk ML, Taipale J. Genome-wide analysis of ETS family DNA-binding in vitro and in vivo. The EMBO Journal. Epub 2010 Jun 1. doi:10.1038/emboj.2010.106 [Pubmed] |
| Related annotations: | PaperBLAST |
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