Transcription Factor

						

			
Accessions: T073812_1.02 (CISBP 1.02), T08200 (AthalianaCistrome v4_May2016)

			
Names: AT2G20110, T073812_1.02;, T08200;
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1, AthalianaCistrome v4_May2016 2
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: experiment type:PBM, family:CxC, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:CPP
Length: 578
Pfam Domains:   116-156 Tesmin/TSO1-like CXC domain
  201-240 Tesmin/TSO1-like CXC domain
Sequence: 
(in bold interface residues)		   1 MGEGEEGDKFPPKTDEVTQESMKSARQLDFTGGSSDVEHSHSNQASSMAAASIPSPIVTV   60
  61 TRPIITSQAPPTVATPIPPPPQSQGIILHVPIRHPRPESPNSMPRPAGETRDGTPQKKKQ  120
 121 CNCKHSRCLKLYCECFASGTYCDGCNCVNCFNNVENEPARRQAVESTLERNPNAFRPKIA  180
 181 ASPHGGRDNREEVGDVVMLARHNKGCHCKKSGCLKKYCECFQANILCSENCKCLDCKNFE  240
 241 GSEVRQSLFHGEHSHNLAYLQHANAAITGAIGSSGFASAPPPKRRKGQEIFFNQGTKDSS  300
 301 THRLGQANNGRTTSSQTGSRAGGNASLGPSKVVYKSLLANIIKPMDVKALCSVLVAVAGE  360
 361 AAKTLTEKRLANQKETSVASSVQDQGHVNNKAEKSGLEDSNADGSKGRSLSPETLALMCD  420
 421 ERDTMLMVAASPNCSVEPTSQLPNGQDQVYAEQEKVVLTKFRDCLNRIISCGEVKVFCLF  480
 481 VAESNCSMSRMDLDTPVQTTVRIDPVVQQAPVANGVSQTAKQPSQLNTTTPNTSSQTANG  540
 541 VSQTAKQPSQLTTTTTTPNTSSQTHLHKTPALSEKKDL
Interface Residues: 132, 217, 301, 320, 321, 322, 323, 325, 326
3D-footprint Homologues: 5fd3_A, 6gy3_A
Binding Motifs: M0588_1.02 rTTTAAAh
M0359 wTTTrAATwTTtwAW
M0354 awTTTrAATTTkaaw
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.