Transcription Factor

						

			
Accessions: T075523_1.02 (CISBP 1.02), Q8LDR0 (JASPAR 2024), T25961 (AthalianaCistrome v4_May2016)

			
Names: OBP4, T075523_1.02;, AtDOF5.4, Dof zinc finger protein DOF5.4, DOF54_ARATH, OBF-binding protein 4, AT5G60850, T25961;
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: experiment type:PBM, family:Dof, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2C2-DOF
Length: 307
Pfam Domains:    47-107 Dof domain, zinc finger
Sequence: MQDIHDFSMNGVGGGGGGGGRFFGGGIGGGGGGDRRMRAHQNNILNHHQSLKCPRCNSLN
TKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSKTKQVPSSSSADKP
TTTQDDHHVEEKSSTGSHSSSESSSLTASNSTTVAAVSVTAAAEVASSVIPGFDMPNMKI
YGNGIEWSTLLGQGSSAGGVFSEIGGFPAVSAIETTPFGFGGKFVNQDDHLKLEGETVQQ
QQFGDRTAQVEFQGRSSDPNMGFEPLDWGSGGGDQTLFDLTSTVDHAYWSQSQWTSSDQD
QSGLYLP
Binding Motifs: M0655_1.02 sGwTAACGwy
M0262 / MA1280.1 sAAAAAGkwaawww
M0261 waaaaacAAAAAGtwaaww
MA1280.2 AAAAAGk
Binding Sites: MA1280.1.1
MA1280.1.10
MA1280.1.11
MA1280.1.12
MA1280.1.13
MA1280.1.14
MA1280.1.15
MA1280.1.16
MA1280.1.17
MA1280.1.18
MA1280.1.19
MA1280.1.2
MA1280.1.20
MA1280.1.3
MA1280.1.4
MA1280.1.5
MA1280.1.6
MA1280.1.7
MA1280.1.8
MA1280.1.9
MA1280.2.1
MA1280.2.10
MA1280.2.11
MA1280.2.12
MA1280.2.13
MA1280.2.14
MA1280.2.15
MA1280.2.16
MA1280.2.17
MA1280.2.18
MA1280.2.19
MA1280.2.2
MA1280.2.20
MA1280.2.3
MA1280.2.4
MA1280.2.5
MA1280.2.6
MA1280.2.7
MA1280.2.8
MA1280.2.9
			
Publications: Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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