Transcription Factor
| Accessions: | T090456_1.02 (CISBP 1.02) |
| Names: | ceh-34, T090456_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 256 |
| Pfam Domains: | 140-190 Homeobox domain 158-188 Homeobox KN domain |
| Sequence: (in bold interface residues) | 1 MQQSYNPQNSLTATTSYSEQEIVCICESLFNEGLQTGRTEQLANFIYNLPQCYQVMESVL 60 61 KAQALVYFTTQNWKMLYKLLECSKFSPHNHTVLQNLWLDAHYKEAAKTKDRELGAVCKYR 120 121 IRKKNPFPNTIWDGEETNYCFKSKSRNVLRDAYKKCQYPSVEDKRRLAQQTELSIIQVSN 180 181 WFKNKRQRERAAGQLDRSSARSNDSDDGSSGCESKPPMNIDSPAPPPLPTSFDLQPYYPS 240 241 PYTFAPHCDFSYIQNL |
| Interface Residues: | 135, 138, 176, 177, 179, 180, 183, 184, 186, 187, 188 |
| 3D-footprint Homologues: | 5zfz_A, 8ik5_C, 2ld5_A, 7q3o_C, 1e3o_C, 7xrc_C, 1le8_A, 8osb_E, 2xsd_C, 1au7_A, 1ig7_A, 1b72_A, 5hod_A, 3cmy_A, 2d5v_B, 1k61_B, 6fqp_B, 4xrm_B, 2lkx_A, 1o4x_A, 3lnq_A, 2hdd_A, 6fqq_E, 4xrs_G, 1puf_B, 1fjl_B, 8ejp_B, 6a8r_A, 3rkq_B, 1le8_B, 8pmf_A, 7psx_B, 5flv_I, 3a01_E, 1zq3_P, 8g87_X, 6es3_K, 4qtr_D, 1mnm_C, 9b8u_A, 2hos_A |
| Binding Motifs: | M0859_1.02 yykaTmyyyy |
| Related annotations: | PaperBLAST |
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