Transcription Factor
| Accessions: | T100198_1.02 (CISBP 1.02) |
| Names: | CBG24578, T100198_1.02; |
| Organisms: | Caenorhabditis briggsae |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 733 |
| Pfam Domains: | 578-617 Homeobox KN domain 579-617 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MSADSKVWAHASADTWTTAQQQQHQQQGGISTYDLDTSSIKREKIDCHEQFNDGYGPPPG 60 61 TASTDAVSYAADPTAYFNLYTNMGAAPTTTPMMHHEMGEAMKRDKEAIYAHPLYPLLVVL 120 121 FEKCELATSTPRETSRDGTTSSDVCSSASFKDDLNEFVKHTQENADKQYYQPNPQLDQIM 180 181 LQSIQMLRFHLLELEKVHELCDNFCNRYVTCLKGKMPLDIVGDERASSSQPPMSPGSMGH 240 241 HGHSGSPSMGGAGAATPMHYPPPYEPQSVPLPENVLGGGHPLEMFPGSSMAYAMAGMAAA 300 301 AASSSSSQPQPGDHPLANGGTLHSTAGASQTLLPIAVSSPSTCSSGGLRQDSTPLSGETP 360 361 MANGNSMDSISEAERIRRRFYMCVIVSAGPSSSSLHQHHLHHPHHFPHHQLQPPAHHQDF 420 421 LLPPPPQNIIEQSLHCAGVSMLDASLIPPSSSSSASEYHGDMMSHMYSHHDVYHHQDMTY 480 481 TDYGDYGTPDVVMMSSSDVKMEDAASVSSSKSGGKKQQPGTPNGRVGKSRGRDEFSVCGS 540 541 NEDGRDSVLSDSANGSQNGKRKVPKVFSKEAITKFRAWLFQNLAHPYPSEEQKKQLAKET 600 601 GLTILQVNNWFINARRRIVQPMIDQNNRAGRTPHMNVCKNRRRNRSEQSPGPSPDSESDS 660 661 GANYSPDPTSLAAATAMHYPGAELYMQRTMNYGGFQPFPNPAMQFMNPMMGFPVAPAVDA 720 721 ISQQWIDLSAPHE |
| Interface Residues: | 542, 543, 546, 559, 560, 561, 563, 564, 605, 608, 609, 612, 613, 614, 615, 616, 617 |
| 3D-footprint Homologues: | 5zfz_A, 2lkx_A, 6fqp_B, 3cmy_A, 3d1n_M, 1au7_A, 3rkq_B, 1puf_B, 8ik5_C, 4j19_B, 8osb_E, 1le8_A, 7q3o_C, 8bx1_A, 4xrs_G, 1fjl_B, 1mnm_C, 5hod_A, 1k61_B, 6fqq_E, 4xrm_B, 2d5v_B, 6a8r_A, 3lnq_A, 1le8_B |
| Binding Motifs: | M1126_1.02 gAsmTGTCAytt |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.