Transcription Factor

						

			
Accessions: T060952_1.02 (CISBP 1.02)

			
Names: NCU03699, T060952_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 555
Pfam Domains:   199-219 C2H2-type zinc finger
  258-287 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 MAYDQSTTLYADAPYNMYHAKSPSLYPEDSNLSVDSHSASSSNAGSPLSNPGNLASWGAP   60
  61 LGPGVSPGIVDQGEFFHGNEYSFTPLDGYNPNFEFSVPKGPGFVDPSLIHPEVRSMAMPS  120
 121 YEQMYPAPNSAYPGSPALSASPQLRTGSTSPFLQNNNYPAYSPFPAPLEPQRRQSLVSYQ  180
 181 SNLSEQPYSGDETLKEKQRCPHPECGKTFKDLKAHMLTHQTERPEKCPIATCEYHVKGFA  240
 241 RKYDKNRHTLTHYKGTMVCGFCPGSGSAAEKSFNRADVFKRHLTAVHGVEQTPPNARKKT  300
 301 GGVNGGNSGNKKLTGYAPDATGKCSTCSQTFSNAQDFYEHLDDCVLRIVQQEDPTEAINA  360
 361 KRLAEVENDLDVHNTLEKNNLPTTTTMTTQMDDIDEDEDMVDEDDNEDPVGGRGSKSSPS  420
 421 RKTKGNPANGVQKSRGLTHSRGGVALQSKARGRKNRRDYPSSWGFDKGQMTMKKRVVAVF  480
 481 DGPRRLAKDDMMLSTEHEVRIKLQDGKSYVTDLDVQTLRRTEGFLNATEEEKGPWISDDP  540
 541 TEEEKEEARRLLMLQ
Interface Residues: 179, 181, 182, 209, 210, 211, 213, 214, 216, 217, 220, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 275, 276, 277, 278, 279, 280, 281, 332, 333
3D-footprint Homologues: 5yel_A, 5k5i_A, 8cuc_F, 7y3l_A, 6jnm_A, 3uk3_C, 7y3m_I, 1tf3_A, 7ysf_A, 6blw_A, 1tf6_A, 1ubd_C, 6a57_A, 6ml4_A, 2kmk_A, 6u9q_A, 1g2f_F, 2jpa_A, 6e94_A, 1llm_D, 4x9j_A, 2wbs_A
Binding Motifs: M0472_1.02 yrsGGCTGar
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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