Transcription Factor
| Accessions: | T134804_1.02 (CISBP 1.02) |
| Names: | T134804_1.02;, VDR |
| Organisms: | Petromyzon marinus |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Nuclear receptor |
| Length: | 406 |
| Pfam Domains: | 26-94 Zinc finger, C4 type (two domains) 204-379 Ligand-binding domain of nuclear hormone receptor |
| Sequence: (in bold interface residues) | 1 MMATQNMTVSTSNALEDDEEGGVPKVCGVCGDKATGYHFNAMTCEGCKGFFRRSMKRSAS 60 61 FTCPFEGKCNITKDNRRHCQACRLKRCRDIGMMKELIMTEEEVQRKKEIIMKRKLEDSAR 120 121 EVHTPQLLEEQERLIATLIEAHRKTYDASYSDFSQFRPPKRGDGSPECRNATNPFLMSLL 180 181 NSDMDELPKASASGAEAAAGDELSMLPHLADLVSYSIQKVIGFAKMIPGFKELCTEDQIS 240 241 LLKASAIEIIILRSNESFTMEDNSWTCGSNEFKYQIGDVMQAGHKLELLEPLVKFQVNMK 300 301 KLDLHEAEHVLLMAICLFSPDRPGVQDRCRVEEVQEHLTETLRAYIACRHPLSCKHMLYT 360 361 KMVEKLTELRSLNEEHSKQYLQISQDAVNKEDLPPLLLEVFGNPTA |
| Interface Residues: | 35, 36, 38, 39, 45, 46, 48, 49, 52, 53, 77, 101, 106, 108 |
| 3D-footprint Homologues: | 6fbq_A, 7wnh_D, 6l6q_B, 1lo1_A, 3g9m_B, 1a6y_A, 4oln_B, 7xvn_C, 4iqr_B, 2han_A, 1hcq_E, 8cef_H, 5krb_G, 2han_B, 1kb2_B, 2a66_A, 8hbm_B, 2nll_B, 1lat_A, 7xv6_B, 2ff0_A, 1dsz_A, 4umm_E, 3cbb_A, 5emc_A, 7prw_B, 5cbx_B, 3g6t_A, 1r4i_A, 5cbz_E, 4tnt_B, 5e69_A, 4hn5_B, 8rm6_A |
| Binding Motifs: | M1493_1.02 ryGamCy |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.