Transcription Factor
| Accessions: | T061528_1.02 (CISBP 1.02) |
| Names: | egrh-3, T061528_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 287 |
| Pfam Domains: | 124-148 Zinc finger, C2H2 type 140-164 Zinc-finger double domain 154-176 Zinc finger, C2H2 type 168-192 Zinc-finger double domain |
| Sequence: (in bold interface residues) | 1 MQQQQQQQQQQAPHPHQNQHAQLINRIISSAYNNQHDNGSFDSSILLNGQQKFDLFQGHQ 60 61 NHLMQNGGGGLLGNNQQAPRGGTNGTSSSSTTATTTTSTKKKKGQGPGRRPALDANGMPK 120 121 ERPFVCPRPDCQKRFCRNDHLQRHMRIHTGQRLFQCRTCLRSFSRSDHLAKHERTHSADK 180 181 PYSCLTCARRFHKHEEKKKHEEKCQHKVEDQQQGGAGRQQLNLMGNAHNMYPNQTTSTTS 240 241 ATSAAATSSATSSFRHAHFDRIVDDIERFNAIAQLEQLEHDDTCDDI |
| Interface Residues: | 135, 136, 137, 138, 139, 140, 142, 143, 154, 164, 165, 166, 167, 168, 170, 171, 172, 192, 193, 194, 195, 196, 197, 198, 199, 200 |
| 3D-footprint Homologues: | 8gn3_A, 6jnm_A, 1tf3_A, 5v3j_F, 7n5w_A, 2wbs_A, 1ubd_C, 7ysf_A, 6wmi_A, 5ei9_F, 2jpa_A, 8ssq_A, 1mey_C, 7w1m_H, 5und_A, 1f2i_J, 7eyi_G, 8ssu_A, 6ml4_A, 2gli_A, 1g2f_F, 6blw_A, 5kkq_D, 1tf6_A, 6u9q_A, 4x9j_A, 2i13_A, 6e94_A, 5kl3_A, 8h9h_G, 2lt7_A, 6a57_A, 2kmk_A, 3uk3_C, 8cuc_F, 7y3l_A, 5yj3_D, 2drp_D, 5k5i_A, 5yel_A, 1llm_D, 7txc_E, 4m9v_C, 7y3m_I |
| Binding Motifs: | M0499_1.02 rkRGGrG |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.