Transcription Factor
| Accessions: | T09752 (AthalianaCistrome v4_May2016), Q9ZQ25 (JASPAR 2024) |
| Names: | ANAC038, AT2G24430, T09752;, NAC domain containing protein 38, NAM (No apical meristem, Q9ZQ25_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 316 |
| Pfam Domains: | 16-143 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MEQGDHQQHKKEEEALPPGFRFHPTDEELISYYLVNKIADQNFTGKAIADVDLNKSEPWE 60 61 LPEKAKMGGKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSTTSELVGMKKT 120 121 LVFYRGRAPRGEKTCWVMHEYRLHSKSSYRTSKQDEWVVCRVFKKTEATKKYISTSSSST 180 181 SHHHNNHTRASILSTNNNNPNYSSDLLQLPPHLQPHPSLNINQSLMANAVHLAELSRVFR 240 241 ASTSTTMDSSHQQLMNYTHMPVSGLNLNLGGALVQPPPVVSLEDVAAVSASYNGENGFGN 300 301 VEMSQCMDLDGYWPSY |
| Interface Residues: | 82, 87, 89, 98, 100, 102, 124, 127, 128, 129, 130, 133 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A, 1dmu_A |
| Binding Motifs: | M0667 TwrCkTGtdkwacAmGww M0705 grTwaCkTrtdwyaCAAGwAA MA2033.1 / UN0345.1 wggTtrCkTGTawcACAAGtwAyc MA2033.2 TtrCkTGTawcACAAGtwA |
| Binding Sites: | UN0345.1.3 UN0345.1.4 UN0345.1.5 MA2033.1.1 / UN0345.1.1 MA2033.1.4 / UN0345.1.10 UN0345.1.11 MA2033.1.6 / UN0345.1.12 MA2033.1.7 / UN0345.1.13 UN0345.1.14 MA2033.1.8 / UN0345.1.15 UN0345.1.16 MA2033.1.9 / UN0345.1.17 UN0345.1.18 UN0345.1.19 UN0345.1.2 UN0345.1.20 UN0345.1.6 MA2033.1.2 / UN0345.1.7 UN0345.1.8 MA2033.1.3 / UN0345.1.9 MA2033.1.10 MA2033.1.11 MA2033.1.12 MA2033.1.13 MA2033.1.14 MA2033.1.15 MA2033.1.16 MA2033.1.17 MA2033.1.18 MA2033.1.19 MA2033.1.20 MA2033.1.5 MA2033.2.7 MA2033.2.1 MA2033.2.2 MA2033.2.4 MA2033.2.10 MA2033.2.11 MA2033.2.12 MA2033.2.13 MA2033.2.14 MA2033.2.15 MA2033.2.16 MA2033.2.17 MA2033.2.18 MA2033.2.19 MA2033.2.20 MA2033.2.3 MA2033.2.5 MA2033.2.6 MA2033.2.8 MA2033.2.9 |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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