Transcription Factor

						

			
Accessions: T116872_1.02 (CISBP 1.02), T12340 (AthalianaCistrome v4_May2016)

			
Names: AT3G13040, T116872_1.02;, T12340;
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1, AthalianaCistrome v4_May2016 2
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: experiment type:PBM, family:Myb/SANT, ecotype:Col-0, experiment type: DAP-seq, family:G2-like
Length: 449
Pfam Domains:   170-204 MYB-CC type transfactor, LHEQLE motif
  243-294 Myb-like DNA-binding domain
  331-379 MYB-CC type transfactor, LHEQLE motif
Sequence: 
(in bold interface residues)		   1 MYIKAIMNRHRLLSAATDECNKKLGQACSSSLSPVHNFLNVQPEHRKTPFIRSQSPDSPG   60
  61 QLWPKNSSQSTFSRSSTFCTNLYLSSSSTSETQKHLGNSLPFLPDPSSYTHSASGVESAR  120
 121 SPSIFTEDLGNQCDGGNSGSLLKDFLNLSGDACSDGDFHDFGCSNDSYCLSDQMELQFLS  180
 181 DELELAITDRAETPRLDEIYETPLASNPVTRLSPSQSCVPGAMSVDVVSSHPSPGSAANQ  240
 241 KSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQKYRLAKYMP  300
 301 EKKEEKRTDNSEEKKLALSKSEADEKKKGAIQLTEALRMQMEVQKQLHEQLEVQRVLQLR  360
 361 IEEHAKYLEKMLEEQRKTGRWISSSSQTVLSPSDDSIPDSQNMSKTKASSPQPPLPAENK  420
 421 ASETEDDKCESPQKRRRLENIAESEDPKR
Interface Residues: 243, 283, 284, 287, 288, 291, 292
3D-footprint Homologues: 8xas_E, 6j5b_C, 6qec_A, 7d3t_D
Binding Motifs: M1326_1.02 rwakATtCyc
M0399 awGAAAACa
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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