Transcription Factor
| Accessions: | AuxinResponseFactor13 (EEADannot 2023-12-22) |
| Names: | ARF13, GRMZM2G378580 |
| Organisms: | Zea mays |
| Libraries: | EEADannot 2023-12-22 1 1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | family:ARF |
| Length: | 849 |
| Pfam Domains: | 148-249 B3 DNA binding domain 274-356 Auxin response factor 678-806 AUX/IAA family |
| Sequence: (in bold interface residues) | 1 MTSSAAAAAAAAQVAGGGGGGEGDAAAAARGGGGTEDGMYTELWNLCAGPLVTVPRVGDK 60 61 VYYFPQGHIEQVEASTNQVAEQHMQFYDLPWKILCEVMNVELKAEPDNDEVYAQLTLLPE 120 121 SKPEENGSSEEMPASPPAALARPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMT 180 181 RQPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLRGDSG 240 241 ELRVGVRRAMRQQANVPSSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTSPAEFVVP 300 301 CDRYMESLKRNYPIGMRFKMRFEGEEAPEQRFTGTIVGNVDPDQAGWAESKWRYLKVRWD 360 361 EASSIPRPERVSPWQIEPAVSPPPINPLPVHRPKRPRSNAVASLPESSAPTKEAAPKVTL 420 421 ETQQHALQRPLQTQDNVAPKSVFGDNSELDSAHKSSLRPSGFDLDKSTIGMQRKLGSDIW 480 481 MRMNRPDGYSEMLSGYQPPNEGARNSQGFCSLPDQIAAGRPNFWHTVNAHYQDQQGNHNL 540 541 FPGSWSMMPSSTGFGMNRQSYPMIQEVGGMSQSCTNTKFGNGVYAALPGRGIDRYPSGWF 600 601 GHTTPGGRVDDAQPRVIKPQPLVLAHGEALKMKGNSCKLFGIHLDSPAKSEPLKSPPSVA 660 661 TPAAEKWMADGIDADKSPEPHKTPKQLGATQVDPVPERCPQASRGTQCKSQGGSTRSCKK 720 721 VHKQGMALGRSVDLTKFNGYTELVAELDEMFDFNGELKGCSKEWMVVYTDYEGDMMLVGD 780 781 DPWNEFCSMVHKIFVYTREEVQRMNPGALNSRPEDSGLANSTERGSASTAAAREAPGYQS 840 841 ASSLNSDNC |
| Interface Residues: | 42, 107, 155, 160, 161, 162, 164, 205, 207, 208, 210, 240, 243, 244, 248, 249 |
| 3D-footprint Homologues: | 5ean_A, 6sdg_B, 6ycq_A, 7et6_A, 1jj4_B |
| Binding Motifs: | EEAD0027 GGGGGACAyG |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.