Transcription Factor

						

			
Accessions: T060951_1.02 (CISBP 1.02)

			
Names: NCU03552, T060951_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 379
Pfam Domains:   285-309 C2H2-type zinc finger
  286-309 Zinc finger, C2H2 type
  316-338 Zinc finger, C2H2 type
  316-336 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 MVTHALSMCDLHLDMDHHHHHDAGFLDYPSSAFTGIRSSYSFASNGPFTPSSGSSTPARH   60
  61 NSMDFGPSSFAPAVDNVFTPPPSSVSAYFPLNMKAGDGSDLFAPGMPLTPSRTQVNNNVH  120
 121 PMQYYNDVATHFTSPQQMDYYTFHNGLAPSPLAPSPAVQAIQPGNTYDAWSVWEQAESPI  180
 181 FSKFLSPSSSSCRSASRVKQEGDMSPMSAGGHSYPSPTEKRQLYVEEARQKTTALQMVQR  240
 241 DAPLAPRPSMHMNGEGKPENESHNPYGPGSILIDPIQRVSAGTNICDYPGCGKTYRRSEH  300
 301 LKRHKTNAHSEVPVWYPCSFCDKKFNRPDNRRQHLGLHAKPRPTKMKGVKYAPKAKAALE  360
 361 EELKNIPRRNKKPKSEHHA
Interface Residues: 268, 270, 275, 296, 297, 298, 299, 300, 301, 302, 303, 305, 306, 307, 309, 326, 327, 328, 329, 330, 332, 333, 344, 347, 353, 355, 356, 357, 358, 360, 361
3D-footprint Homologues: 2gli_A, 1tf6_A, 1mey_C, 1tf3_A, 6ml4_A, 7n5w_A, 3uk3_C, 7y3l_A, 6jnm_A, 5kl3_A, 2kmk_A, 4x9j_A, 7ysf_A, 1f2i_J, 5v3j_F, 6blw_A, 5ei9_F, 2i13_A, 8gn3_A, 1llm_D, 5yel_A, 1ubd_C, 5kkq_D, 2drp_D, 7eyi_G, 8h9h_G, 2lt7_A, 6wmi_A, 6a57_A, 2jpa_A, 6u9q_A, 2wbs_A, 7txc_E, 5yj3_D, 6e94_A
Binding Motifs: M0471_1.02 mAGGGAkr
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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